Browse Element(s) Details


Os.11211.1.S1_at

Description gb:AK064887.1
DB_XREF= gi:32974905
TID=Os.11211.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-040-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K12, full insert sequence.
FL= gb:AK064887.1 gb:AK104804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3702011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36976Os.24767.1.S1_at11/119+21330266..21332247expressed protein
LOC_Os09g36976OsAffx.30161.1.S1_s_at11/119+21330266..21332247expressed protein
LOC_Os09g36982Os.51421.1.S1_at10/119+21332768..21334610expressed protein
LOC_Os09g36990Os.10051.1.S1_at11/119+21336091..21338012expressed protein
LOC_Os09g37000Os.15703.1.S1_at11/119+21338282..2134172726S proteasome non-ATPase regulatory subunit 3, putative, expressed
LOC_Os09g37006Os.9612.1.S1_at11/119+21343056..21346171expressed protein
LOC_Os09g37012Os.27784.1.S1_at11/119+21346754..21350396Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g37020Os.11211.1.S1_at11/119+21354735..21357365expressed protein
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11211.1.S1_at--293--3831Chr09:21355574..21355598 (25 bp)
CTGCCGTGCACTTTACATAGCTAAC
LOC_Os09g37020
Os.11211.1.S1_at--1079--3151Chr09:21355548..21355572 (25 bp)
AATTGAACTCATCATCGACCTATCC
LOC_Os09g37020
Os.11211.1.S1_at--921--5831Chr09:21355532..21355556 (25 bp)
GACCTATCCTTTGCTGGAGCTGTTC
LOC_Os09g37020
Os.11211.1.S1_at--125--8511Chr09:21355177..21355201 (25 bp)
TGGCAGCACGGGTTGTCGGTAATTC
LOC_Os09g37020
Os.11211.1.S1_at--110--7831Chr09:21355160..21355184 (25 bp)
GGTAATTCGGTGTCTGAGTTCCAGT
LOC_Os09g37020
Os.11211.1.S1_at--1068--6051Chr09:21355145..21355169 (25 bp)
GAGTTCCAGTCAGGCTTCAGCGATA
LOC_Os09g37020
Os.11211.1.S1_at--787--5831Chr09:21355112..21355136 (25 bp)
GACCTAGCAGCGAGGGTTTCCTTCA
LOC_Os09g37020
Os.11211.1.S1_at--949--6831Chr09:21354977..21355121 (25 bp)
GTTTCCTTCAAGTATGGGTGCACGA
LOC_Os09g37020
Os.11211.1.S1_at--890--10231Chr09:21354926..21354950 (25 bp)
TTTGTGAACGGATTCCTTCAGCCTG
LOC_Os09g37020
Os.11211.1.S1_at--138--6391Chr09:21354895..21354919 (25 bp)
GATCGCCTATTGACTACAGCACATG
LOC_Os09g37020
Os.11211.1.S1_at--912--1491Chr09:21354878..21354902 (25 bp)
AGCACATGGGTCAGCATCCTGGATC
LOC_Os09g37020
Target Sequence 
CTGCCGTGCACTTTACATAGCTAACAAATTGAACTCATCATCGACCTATCCTTTGCTGGAGCTGTTCTTCAAGAGCCAGG
GTAAGTTCTACAATGCTGCAACATCCTCACTATCGAGCACTGTTATAAGTGGCGAGATGTCAAAGCTGGCAGCACGGGTT
GTCGGTAATTCGGTGTCTGAGTTCCAGTCAGGCTTCAGCGATATAAGGACTGACCTAGCAGCGAGGGTTTCCTTCAAGTA
TGGGTGCACGAGAGGAGTAGCCGGTGCACCGTTCTTCTTTGTGAACGGATTCCTTCAGCCTGGTGGTGGATCGCCTATTG
ACTACAGCACATGGGTCAGCATCCTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis