Browse Element(s) Details


Os.11250.1.S1_at

Description gb:AK106488.1
DB_XREF= gi:32991697
TID=Os.11250.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A02, full insert sequence.
FL= gb:AK106488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1380011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein
LOC_Os02g13800Os.11250.1.S1_at11/112+7464028..7465505HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g13810Os.53922.1.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13810Os.53922.2.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13820OsAffx.12026.1.S1_at11/112+7478244..7478525hypothetical protein
LOC_Os02g13830OsAffx.2601.1.S1_at11/112+7485426..7487001TWIN SISTER of FT protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11250.1.S1_at--763--1611Chr02:7465082..7465106 (25 bp)
AGCTGTAACCGCTTTGAGATTCGTG
LOC_Os02g13800
Os.11250.1.S1_at--901--3671Chr02:7465093..7465117 (25 bp)
CTTTGAGATTCGTGCTCTTGTTGCC
LOC_Os02g13800
Os.11250.1.S1_at--858--9571Chr02:7465108..7465132 (25 bp)
TCTTGTTGCCGATCCAACGATTTGT
LOC_Os02g13800
Os.11250.1.S1_at--157--6371Chr02:7465118..7465142 (25 bp)
GATCCAACGATTTGTGTACGCAGTA
LOC_Os02g13800
Os.11250.1.S1_at--367--4111Chr02:7465136..7465160 (25 bp)
CGCAGTAGTATTTTCCGTTTCAGTT
LOC_Os02g13800
Os.11250.1.S1_at--517--9151Chr02:7465161..7465185 (25 bp)
TGCCCTCCCCAAAGTGTTTGGACGA
LOC_Os02g13800
Os.11250.1.S1_at--30--2051Chr02:7465288..7465312 (25 bp)
ACTTGTGGGCCAGCCGGGTGTATAT
LOC_Os02g13800
Os.11250.1.S1_at--1153--6991Chr02:7465335..7465359 (25 bp)
GTACTGGTAGTATCTAAGTTCAACA
LOC_Os02g13800
Os.11250.1.S1_at--787--3111Chr02:7465361..7465385 (25 bp)
AATTTGCTCCGTTTGAACAAAAGAT
LOC_Os02g13800
Os.11250.1.S1_at--511--8211Chr02:7465435..7465459 (25 bp)
GGAATCGAATGTTGAGTGTGCCTTG
LOC_Os02g13800
Os.11250.1.S1_at--843--2991Chr02:7465442..7465466 (25 bp)
AATGTTGAGTGTGCCTTGTTTGGAT
LOC_Os02g13800
Target Sequence 
AGCTGTAACCGCTTTGAGATTCGTGCTCTTGTTGCCGATCCAACGATTTGTGTACGCAGTAGTATTTTCCGTTTCAGTTT
GCCCTCCCCAAAGTGTTTGGACGAAGTGGCTGTNAACGGCGAANGAAGGAAGCTAGGTAGCTCNCCTAGTAGCCATGTTG
GGTTTTTTCCCCCTTGTTGGGGGTTTTTGGTCTCGGTGTGTGCCTGNACTTGTGGGCCAGCCGGGTGTATATNCGCAAGC
AAAAAAAAATAATAGTACTGGTAGTATCTAAGTTCAACAAAATTTGCTCCGTTTGAACAAAAGATTTCAAAAACTACAGA
AACAGGAAAAGCACAGTATTAGGAATCGAATGTTGGAATCGAATGTTGAGTGTGCCTTGTTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis