Browse Element(s) Details


OsAffx.2601.1.S1_at

Description tigr:9630.m01278
TID=OsAffx.2601.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylethanolamine-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1383011/11TWIN SISTER of FT protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13800Os.11250.1.S1_at11/112+7464028..7465505HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g13810Os.53922.1.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13810Os.53922.2.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13820OsAffx.12026.1.S1_at11/112+7478244..7478525hypothetical protein
LOC_Os02g13830OsAffx.2601.1.S1_at11/112+7485426..7487001TWIN SISTER of FT protein, putative
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009744biological_processresponse to sucrose stimulus
GO:0009910biological_processnegative regulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005515molecular_functionprotein binding
GO:0008429molecular_functionphosphatidylethanolamine binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2601.1.S1_at--844--491Chr02:7485459..7485483 (25 bp)
ATCGGAGATGTCCTGGATCCCTTCA
LOC_Os02g13830
OsAffx.2601.1.S1_at--764--7211Chr02:7485492..7485516 (25 bp)
GTCGATCTCACCGTCATGTATGGTG
LOC_Os02g13830
OsAffx.2601.1.S1_at--427--8871Chr02:7485515..7485539 (25 bp)
TGATGATGGCATGCCGGTCATAAGC
LOC_Os02g13830
OsAffx.2601.1.S1_at--190--7651Chr02:7485593..7485617 (25 bp)
GGGAGACGATCTTCGCGTCGCATAT
LOC_Os02g13830
OsAffx.2601.1.S1_at--1006--10631Chr02:7485604..7485625 (22 bp)
TTCGCGTCGCATATACTCTGGTGAT
LOC_Os02g13830
OsAffx.2601.1.S1_at--1005--6231Chr02:7485815..7485839 (25 bp)
GATGGTTGATCCTGATGCACCTAAC
LOC_Os02g13830
OsAffx.2601.1.S1_at--532--9791Chr02:7485836..7485860 (25 bp)
TAACCCTAGCAATCCAACTCTGAGG
LOC_Os02g13830
OsAffx.2601.1.S1_at--299--2551Chr02:7485851..7485875 (25 bp)
AACTCTGAGGGAATACCTCCACTGG
LOC_Os02g13830
OsAffx.2601.1.S1_at--850--811Chr02:7486507..7486531 (25 bp)
ATGGTGACTGACATCCCGGCTTCAA
LOC_Os02g13830
OsAffx.2601.1.S1_at--750--8291Chr02:7486524..7486547 (24 bp)
GGCTTCAACCGATGCTACATATGGG
LOC_Os02g13830
OsAffx.2601.1.S1_at--731--9931Chr02:7486762..7486786 (25 bp)
TACGAGAGCCCGAACCCGACGACGG
LOC_Os02g13830
Target Sequence 
ATCGGAGATGTCCTGGATCCCTTCATCAGCACCGTCGATCTCACCGTCATGTATGGTGATGATGGCATGCCGGTCATAAG
CGGCGTGGAGCTTCGCGCACCGGCGGTCGCGGAGAAACCGGTGGTCGAAGTCGGGGGAGACGATCTTCGCGTCGCATATA
CTCTGGTGATGGTTGATCCTGATGCACCTAACCCTAGCAATCCAACTCTGAGGGAATACCTCCACTGGATGGTGACTGAC
ATCCCGGCTTCAACCGATGCTACATATGGGAGGGAGGTGGTGTGCTACGAGAGCCCGAACCCGACGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis