Browse Element(s) Details


OsAffx.16280.1.S1_at

Description tigr:9635.m01526
TID=OsAffx.16280.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g153308/11hypothetical protein
LOC_Os02g138501/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15270Os.34081.1.S1_at11/117+8805577..8809749expressed protein
LOC_Os07g15280OsAffx.10168.1.S1_at11/117+8810541..8813552hypothetical protein
LOC_Os07g15290Os.26886.1.S1_x_at6/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15290Os.26886.3.S1_x_at2/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15300Os.26886.1.S1_x_at2/117+8822926..8824767hypothetical protein
LOC_Os07g15300OsAffx.26148.1.S1_x_at1/117+8822926..8824767hypothetical protein
LOC_Os07g15310OsAffx.16467.1.S1_at9/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.6.S1_s_at7/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.2.S1_s_at6/117+8825043..8825682hypothetical protein
LOC_Os07g15320Os.36470.1.S1_at11/117+8827244..8829268expressed protein
LOC_Os07g15330OsAffx.16280.1.S1_at8/117+8829639..8832338hypothetical protein
LOC_Os07g15330OsAffx.8723.1.S1_at2/117+8829639..8832338hypothetical protein
LOC_Os07g15340Os.20614.3.S1_x_at11/117+8839730..8842423hAT family dimerisation domain containing protein
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16280.1.S1_at--335--2311Chr07:8833376..8833397 (22 bp)
AAAGGCGGCAATGGCCATTTCGCGG
NONE
OsAffx.16280.1.S1_at--275--8211Chr07:8832348..8832372 (25 bp)
GGAATCCAATACCATTTACACAGTT
NONE
OsAffx.16280.1.S1_at--24--8011Chr07:8832316..8832340 (25 bp)
GGATGGCTTTCTATGTGAGGCTAGT
NONE
OsAffx.16280.1.S1_at--216--9551Chr07:8832307..8832331 (25 bp)
TCTATGTGAGGCTAGTGCTGACGGC
LOC_Os07g15330
OsAffx.16280.1.S1_at--782--4071Chr07:8832283..8832307 (25 bp)
CGAGCCTGTGGATCCTCTTCGCTTT
LOC_Os07g15330
OsAffx.16280.1.S1_at--1124--5311Chr07:8832210..8832234 (25 bp)
GAAGTTGTGGTCAGTGGTCACCGTT
LOC_Os07g15330
OsAffx.16280.1.S1_at--943--8591Chr07:8832196..8832220 (25 bp)
TGGTCACCGTTGTGTTCGGTTGGTC
LOC_Os07g15330
OsAffx.16280.1.S1_at--1109--5691Chr07:8832161..8832185 (25 bp)
GACTACATTGATGCGCAGCCGGCAG
LOC_Os07g15330
OsAffx.16280.1.S1_at--41--7731Chr07:8832101..8832125 (25 bp)
GGGTGGCCCGTGAATGCAATTTTAA
LOC_Os07g15330
OsAffx.16280.1.S1_at--179--4033Chr12:9316608..9316918 (25 bp)
CGTCAACTGGCGCTGAATGTCATGC
NONE
OsAffx.16280.1.S1_at--223--7131Chr07:8830317..8830341 (25 bp)
GTCATGCCACCGTAGATGGGAGTCT
LOC_Os07g15330
Target Sequence 
AAAGGCGGCAATGGCCATTTCGCGGCGCTCCTGCGAGGCCGGTCTGGCTGTGCGCGGTGGCGGCCAAGGTGGGGCGAGGA
GGTGATGGCGACGAGCGGCACTGGGAGGATGTGGAATCCAATACCATTTACACAGTTGCATTGGGGATGGCTTTCTATGT
GAGGCTAGTGCTGACGGCGAGCCTGTGGATCCTCTTCGCTTTGGCTGTTGGTGGGGCGACGTTGCATGCCGACGAGAGCG
GCGGAGCGGGGAAGTTGTGGTCAGTGGTCACCGTTGTGTTCGGTTGGTCGGGGCAGCCCGACTACATTGATGCGCAGCCG
GCAGCACCAGAGGAGGAGTGGTCAATGGTGGTGGCGGCGGGGTGGCCCGTGAATGCAATTTTAATTTGGTTCAAAATTTT
GGACCCCCANTNNAAAACCCATGGCGCTGAACTTAGACACCTCAACGCCACGTCAACTGGCGCTGAATGTCATGCCACCG
TAGATGGGAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16280.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis