Browse Element(s) Details


OsAffx.10168.1.S1_at

Description tigr:9635.m01521
TID=OsAffx.10168.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1528011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15240OsAffx.16279.1.S1_at11/117+8785598..8786055hypothetical protein
LOC_Os07g15250Os.54691.1.S1_x_at2/117+8788551..8792984Zinc knuckle family protein
LOC_Os07g15260OsAffx.19542.3.S1_x_at2/117+8795620..8799468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15270Os.34081.1.S1_at11/117+8805577..8809749expressed protein
LOC_Os07g15280OsAffx.10168.1.S1_at11/117+8810541..8813552hypothetical protein
LOC_Os07g15290Os.26886.1.S1_x_at6/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15290Os.26886.3.S1_x_at2/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15300Os.26886.1.S1_x_at2/117+8822926..8824767hypothetical protein
LOC_Os07g15300OsAffx.26148.1.S1_x_at1/117+8822926..8824767hypothetical protein
LOC_Os07g15310OsAffx.16467.1.S1_at9/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.6.S1_s_at7/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.2.S1_s_at6/117+8825043..8825682hypothetical protein
LOC_Os07g15320Os.36470.1.S1_at11/117+8827244..8829268expressed protein
LOC_Os07g15330OsAffx.16280.1.S1_at8/117+8829639..8832338hypothetical protein
LOC_Os07g15330OsAffx.8723.1.S1_at2/117+8829639..8832338hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10168.1.S1_at--552--1531Chr07:8811911..8811935 (25 bp)
AGCAGTGTGACAGTTCATTGAGCAA
LOC_Os07g15280
OsAffx.10168.1.S1_at--232--2811Chr07:8811078..8811102 (25 bp)
AAGGCCTTGCTTGAACAGTTTGAAA
LOC_Os07g15280
OsAffx.10168.1.S1_at--1030--8051Chr07:8810967..8810991 (25 bp)
GGAGACAGCCACGTTGTCAGAGCTT
LOC_Os07g15280
OsAffx.10168.1.S1_at--92--5931Chr07:8810948..8810972 (25 bp)
GAGCTTGACAATACCTTCTCAGAGA
LOC_Os07g15280
OsAffx.10168.1.S1_at--605--2171Chr07:8810918..8810942 (25 bp)
ACACGCGCAGAACAATCTCTTCGGA
LOC_Os07g15280
OsAffx.10168.1.S1_at--208--6651Chr07:8810885..8810909 (25 bp)
GTTGACAACACGTTCTCAGCGAAGA
LOC_Os07g15280
OsAffx.10168.1.S1_at--334--611Chr07:8810854..8810878 (25 bp)
ATGCGGAACAATATCTTCGGAGGAC
LOC_Os07g15280
OsAffx.10168.1.S1_at--214--3511Chr07:8810795..8810819 (25 bp)
CATGAAGAACAATCTCTGCGGAGGA
LOC_Os07g15280
OsAffx.10168.1.S1_at--347--5231Chr07:8810768..8810792 (25 bp)
GAATTTGACAAGACGTTCTCAGAGA
LOC_Os07g15280
OsAffx.10168.1.S1_at--1026--10531Chr07:8810594..8810618 (25 bp)
TTCATCATCCTTCGCAAGTCAGTTG
LOC_Os07g15280
OsAffx.10168.1.S1_at--251--2851Chr07:8810579..8810603 (25 bp)
AAGTCAGTTGGCTCGTTCCTTGAGT
LOC_Os07g15280
Target Sequence 
AGCAGTGTGACAGTTCATTGAGCAAAGAGTTCATCAAATTTCAAGAATCATATGAAATATTCTGTAAAGAAAAAGATGTG
CACGTACAGGCATTCAGANNNCTGTTCTCAAAAGTTGAAGTTGAGAAGAAGGCCTTGCTTGAACAGTTTGAAAATCATAN
NNAGGAGGAGACAGCCACGTTGTCAGAGCTTGACAATACCTTCTCAGAGAAGATAACACGCGCAGAACAATCTCTTCGGA
AGACTGAAGTTGACAACACGTTCTCAGCGAAGATAACACATGCGGAACAATATCTTCGGAGGACACAATTTAACAACATG
TTCTCTGGGAAGAAAACACATGAAGAACAATCTCTGCGGAGGAAAGAATTTGACAAGACGTTCTCAGAGAAGGTAACACA
TGCAGAACAACCTCTGAGGAGGATGAAGCAGGATGATAAGTCCTTCATCATCCTTCGCAAGTCAGTTGGCTCGTTCCTTG
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis