Browse Element(s) Details


OsAffx.16279.1.S1_at

Description tigr:9635.m01517
TID=OsAffx.16279.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1524011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15210OsAffx.22947.5.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.3.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.1.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.2.S1_x_at3/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210Os.25048.1.S1_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210OsAffx.22947.5.S1_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15210Os.46715.1.S1_x_at1/117+8762127..8768484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15220OsAffx.28456.1.S1_at10/117+8771651..8774633hypothetical protein
LOC_Os07g15230Os.36470.1.S1_at2/117+8781823..8783501hypothetical protein
LOC_Os07g15240OsAffx.16279.1.S1_at11/117+8785598..8786055hypothetical protein
LOC_Os07g15250Os.54691.1.S1_x_at2/117+8788551..8792984Zinc knuckle family protein
LOC_Os07g15260OsAffx.19542.3.S1_x_at2/117+8795620..8799468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15270Os.34081.1.S1_at11/117+8805577..8809749expressed protein
LOC_Os07g15280OsAffx.10168.1.S1_at11/117+8810541..8813552hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16279.1.S1_at--932--8131Chr07:8785980..8786004 (25 bp)
GGAACCGTAGGGTGTCCCTGTGCTT
LOC_Os07g15240
OsAffx.16279.1.S1_at--171--8671Chr07:8785962..8785986 (25 bp)
TGTGCTTTACCTTCGTACGGCTTCT
LOC_Os07g15240
OsAffx.16279.1.S1_at--838--7871Chr07:8785926..8785950 (25 bp)
GGTTTCAGTGACTTCCGAGGTGTGC
LOC_Os07g15240
OsAffx.16279.1.S1_at--679--1051Chr07:8785909..8785933 (25 bp)
AGGTGTGCGGCTGACTTGCTACCAA
LOC_Os07g15240
OsAffx.16279.1.S1_at--137--8951Chr07:8785898..8785922 (25 bp)
TGACTTGCTACCAACACATCCTTGG
LOC_Os07g15240
OsAffx.16279.1.S1_at--366--5811Chr07:8785842..8785862 (21 bp)
GACGCCTCATCCTCGACAGGTGGGA
LOC_Os07g15240
OsAffx.16279.1.S1_at--937--5651Chr07:8785792..8785813 (22 bp)
GACAGGTGGGAGACCTCCTCGTCGT
LOC_Os07g15240
OsAffx.16279.1.S1_at--861--6191Chr07:8785718..8785742 (25 bp)
GAGGCAGTACATGGCAGTGAACGAT
LOC_Os07g15240
OsAffx.16279.1.S1_at--987--6291Chr07:8785693..8785717 (25 bp)
GATGATGTGCTCCAAATCGACGCCA
LOC_Os07g15240
OsAffx.16279.1.S1_at--171--5431Chr07:8785650..8785674 (25 bp)
GAAGCCTAGACGGTGGTAGCGCCCT
LOC_Os07g15240
OsAffx.16279.1.S1_at--205--4551Chr07:8785630..8785654 (25 bp)
GCCCTCTCACACGTTTGCAGGGAGA
LOC_Os07g15240
Target Sequence 
GGAACCGTAGGGTGTCCCTGTGCTTTACCTTCGTACGGCTTCTGCCACGGCAGGGGTTTCAGTGACTTCCGAGGTGTGCG
GCTGACTTGCTACCAACACATCCTTGGCTACGGCTCCTCCACCGCCGGCATTGATCCCCCACGACGCCTCATCCTCGACA
GGTGGGAGACCTCCTCGTCGTCCTGCGCTGACCGAGTGGTGGAGAGCCACAGCGCCAACCCCTCCCCGTCGAGGCAGTAC
ATGGCAGTGAACGATGATGATGTGCTCCAAATCGACGCCATCACCAATGGGGGTGGGCGAAGCCTAGACGGTGGTAGCGC
CCTCTCACACGTTTGCAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16279.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis