Browse Element(s) Details


Os.36470.1.S1_at

Description gb:AK063314.1
DB_XREF= gi:32973332
TID=Os.36470.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36470 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458G06.23 (P0458G06.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G06, full insert sequence.
FL= gb:AK063314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1532011/11expressed protein
LOC_Os07g152302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15270Os.34081.1.S1_at11/117+8805577..8809749expressed protein
LOC_Os07g15280OsAffx.10168.1.S1_at11/117+8810541..8813552hypothetical protein
LOC_Os07g15290Os.26886.1.S1_x_at6/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15290Os.26886.3.S1_x_at2/117+8817448..8820612transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15300Os.26886.1.S1_x_at2/117+8822926..8824767hypothetical protein
LOC_Os07g15300OsAffx.26148.1.S1_x_at1/117+8822926..8824767hypothetical protein
LOC_Os07g15310OsAffx.16467.1.S1_at9/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.6.S1_s_at7/117+8825043..8825682hypothetical protein
LOC_Os07g15310Os.26886.2.S1_s_at6/117+8825043..8825682hypothetical protein
LOC_Os07g15320Os.36470.1.S1_at11/117+8827244..8829268expressed protein
LOC_Os07g15330OsAffx.16280.1.S1_at8/117+8829639..8832338hypothetical protein
LOC_Os07g15330OsAffx.8723.1.S1_at2/117+8829639..8832338hypothetical protein
LOC_Os07g15340Os.20614.3.S1_x_at11/117+8839730..8842423hAT family dimerisation domain containing protein
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36470.1.S1_at--584--10511Chr07:8828903..8828927 (25 bp)
TTCAGGGAGATCAGGGACGTCGTCT
LOC_Os07g15320
Os.36470.1.S1_at--131--1911Chr07:8828919..8828943 (25 bp)
ACGTCGTCTACGACGTGGCGGCAGA
LOC_Os07g15320
Os.36470.1.S1_at--875--8511Chr07:8828994..8829018 (25 bp)
TGGACGTGACGAAGCTAGCGTCGAT
LOC_Os07g15320
Os.36470.1.S1_at--136--1812Chr07:8829033..8829057 (25 bp)
ACCCCGGCGTGTACATGAACCGTGA
LOC_Os07g15320
Os.36470.1.S1_at--1034--3512Chr07:8829046..8829070 (25 bp)
CATGAACCGTGACCCGTTCGCGAAC
LOC_Os07g15320
Os.36470.1.S1_at--675--1431Chr07:8829081..8829105 (25 bp)
AGAACATGTTCTCCGATTGCCTCCA
LOC_Os07g15320
Os.36470.1.S1_at--1128--71Chr07:8829096..8829120 (25 bp)
ATTGCCTCCATTTTTGCCTGCCTGG
LOC_Os07g15320
Os.36470.1.S1_at--50--8471Chr07:8829118..8829142 (25 bp)
TGGCCCGGTAGATACCTTCAACGAG
LOC_Os07g15320
Os.36470.1.S1_at--1067--1831Chr07:8829138..8829162 (25 bp)
ACGAGATACTCGTGCAACTCCTCAA
LOC_Os07g15320
Os.36470.1.S1_at--142--7771Chr07:8829171..8829195 (25 bp)
GGTGAGAACATGTGGCAGCTCGATC
LOC_Os07g15320
Os.36470.1.S1_at--592--451Chr07:8829197..8829221 (25 bp)
ATCTCACCATGTTAGATCGTGTTTT
LOC_Os07g15320
Target Sequence 
TTCAGGGAGATCAGGGACGTCGTCTACGACGTGGCGGCAGAGGCGAGGCGCGGCGGTGGTGGCGGCGAAACGACGGTGAG
GATCGAGGTGCTGGACGTGACGAAGCTAGCGTCGATGAGGCCGGACGGGCACCCCGGCGTGTACATGAACCGTGACCCGT
TCGCGAACGGCGTGGATGAGAACATGTTCTCCGATTGCCTCCATTTTTGCCTGCCTGGCCCGGTAGATACCTTCAACGAG
ATACTCGTGCAACTCCTCAAGNAACGGCGGTGAGAACATGTGGCAGCTCGATCGATCTCACCATGTTAGATCGTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis