Browse Element(s) Details


OsAffx.12026.1.S1_at

Description tigr:9630.m01277
TID=OsAffx.12026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1382011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13800Os.11250.1.S1_at11/112+7464028..7465505HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g13810Os.53922.1.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13810Os.53922.2.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13820OsAffx.12026.1.S1_at11/112+7478244..7478525hypothetical protein
LOC_Os02g13830OsAffx.2601.1.S1_at11/112+7485426..7487001TWIN SISTER of FT protein, putative
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12026.1.S1_at--455--2951Chr02:7478444..7478468 (25 bp)
AATGGTGGCGATGCAGGGCGGTGCA
LOC_Os02g13820
OsAffx.12026.1.S1_at--971--3751Chr02:7478392..7478416 (25 bp)
CTCTTCCTTGGAGCAGAGGCAGGGA
LOC_Os02g13820
OsAffx.12026.1.S1_at--779--5011Chr02:7478374..7478398 (25 bp)
GCAGGGACAACGGTGCTCCGAGCAA
LOC_Os02g13820
OsAffx.12026.1.S1_at--349--1071Chr02:7478372..7478396 (25 bp)
AGGGACAACGGTGCTCCGAGCAAGA
LOC_Os02g13820
OsAffx.12026.1.S1_at--1087--7291Chr02:7478362..7478386 (25 bp)
GTGCTCCGAGCAAGAGTAGGGTCAA
LOC_Os02g13820
OsAffx.12026.1.S1_at--704--9291Chr02:7478358..7478382 (25 bp)
TCCGAGCAAGAGTAGGGTCAAGTGC
LOC_Os02g13820
OsAffx.12026.1.S1_at--493--7831Chr02:7478343..7478367 (25 bp)
GGTCAAGTGCTATGGCCTCTGCCTC
LOC_Os02g13820
OsAffx.12026.1.S1_at--371--9671Chr02:7478320..7478344 (25 bp)
TCACCCCCAAGTACCTTATCGTGTT
LOC_Os02g13820
OsAffx.12026.1.S1_at--51--9971Chr02:7478309..7478333 (25 bp)
TACCTTATCGTGTTCCCCTTTATCT
LOC_Os02g13820
OsAffx.12026.1.S1_at--230--10151Chr02:7478304..7478328 (25 bp)
TATCGTGTTCCCCTTTATCTTTCAC
LOC_Os02g13820
OsAffx.12026.1.S1_at--1129--8791Chr02:7478299..7478323 (25 bp)
TGTTCCCCTTTATCTTTCACCGTCA
LOC_Os02g13820
Target Sequence 
AATGGTGGCGATGCAGGGCGGTGCAGCCCGTTCGACTGCAGCAGCTCCATCCCTCTTCCTTGGAGCAGAGGCAGGGACAA
CGGTGCTCCGAGCAAGAGTAGGGTCAAGTGCTATGGCCTCTGCCTCACCCCCAAGTACCTTATCGTGTTCCCCTTTATCT
TTCACCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis