Browse Element(s) Details


Os.53922.2.S1_at

Description gb:AK100854.1
DB_XREF= gi:32986063
TID=Os.53922.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53922 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123K05, full insert sequence.
FL= gb:AK100854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1381011/11bZIP protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13790NANA2+7449739..7450231hypothetical protein
LOC_Os02g13800Os.11250.1.S1_at11/112+7464028..7465505HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g13810Os.53922.1.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13810Os.53922.2.S1_at11/112+7466238..7470926bZIP protein, putative, expressed
LOC_Os02g13820OsAffx.12026.1.S1_at11/112+7478244..7478525hypothetical protein
LOC_Os02g13830OsAffx.2601.1.S1_at11/112+7485426..7487001TWIN SISTER of FT protein, putative
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53922.2.S1_at--706--6911Chr02:7468120..7468144 (25 bp)
GTATGAGTCGGCAAAGCGTTCAGCA
LOC_Os02g13810
Os.53922.2.S1_at--934--1631Chr02:7468106..7468130 (25 bp)
AGCGTTCAGCAATTCAACCTGCGAA
LOC_Os02g13810
Os.53922.2.S1_at--335--9151Chr02:7468087..7468111 (25 bp)
TGCGAACAACTACTTCCCAAGAGCC
LOC_Os02g13810
Os.53922.2.S1_at--410--8791Chr02:7468052..7468076 (25 bp)
TGTTCTCAGGCGTGCCCAACATAAT
LOC_Os02g13810
Os.53922.2.S1_at--1083--10011Chr02:7468025..7468048 (24 bp)
TAGCAGCGACCCTCTGAGACAAGGA
LOC_Os02g13810
Os.53922.2.S1_at--1002--5971Chr02:7467807..7468033 (25 bp)
GAGACAAGGATTGGCTGGTCTTCCT
LOC_Os02g13810
Os.53922.2.S1_at--604--7811Chr02:7467791..7467815 (25 bp)
GGTCTTCCTGAAACTCCAGGGCGGA
LOC_Os02g13810
Os.53922.2.S1_at--487--6031Chr02:7467766..7467790 (25 bp)
GAGATGAGGGATGGGCTCCACCACC
LOC_Os02g13810
Os.53922.2.S1_at--464--211Chr02:7467714..7467738 (25 bp)
ATTTGAGCTGTCTGCGGGATCTCCT
LOC_Os02g13810
Os.53922.2.S1_at--385--271Chr02:7467541..7467565 (25 bp)
ATATGTTCACGTAATGTCCTCCTTA
LOC_Os02g13810
Os.53922.2.S1_at--1036--7251Chr02:7467526..7467550 (25 bp)
GTCCTCCTTATTGCTCATGCATGTA
LOC_Os02g13810
Target Sequence 
GTATGAGTCGGCAAAGCGTTCAGCAATTCAACCTGCGAACAACTACTTCCCAAGAGCCCAGCCAGACCTGTTCTCAGGCG
TGCCCAACATAATGGATAGCAGCGACCCTCTGAGACAAGGATTGGCTGGTCTTCCTGAAACTCCAGGGCGGAGAGATGAG
GGATGGGCTCCACCACCAAGGCAACGTCGGTCCACCTCTGGACCATTTGAGCTGTCTGCGGGATCTCCTGCTCACAATGC
GGCGCCTCCGGTTGATATTAGGCCCAGACAGCCAGCACGGCCCGTATTCGGCACTGCCATGAATAATACTTCTGCAGCTC
TGCGAAATATGATAATCTCGCCTGTGAAACGTCCTCAGCTTTCCCGAAACCGTCCACATATGTTCACGTAATGTCCTCCT
TATTGCTCATGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53922.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis