Browse Element(s) Details


Os.27983.1.S2_at

Description gb:AK065815.1
DB_XREF= gi:32975833
TID=Os.27983.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127G17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041I15, full insert sequence.
FL= gb:AK065815.1 gb:AK103384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1385011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13820OsAffx.12026.1.S1_at11/112+7478244..7478525hypothetical protein
LOC_Os02g13830OsAffx.2601.1.S1_at11/112+7485426..7487001TWIN SISTER of FT protein, putative
LOC_Os02g13840Os.11467.1.S1_at10/112+7491241..7497864Citrate synthase, glyoxysomal precursor, putative, expressed
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13860OsAffx.2602.2.S1_at11/112+7513963..7514649hypothetical protein
LOC_Os02g13870Os.2678.1.S1_at11/112+7516220..7519336Aquaporin NIP1.2, putative, expressed
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27983.1.S2_at--103--531Chr02:7512997..7513021 (25 bp)
ATCGAGCGATCCTTCGATCTTGCTG
LOC_Os02g13850
Os.27983.1.S2_at--498--6011Chr02:7513034..7513058 (25 bp)
GAGAGTGGTTACCTCCCATCTTCAA
LOC_Os02g13850
Os.27983.1.S2_at--358--9311Chr02:7513061..7513085 (25 bp)
TCCCCTTCTTCAAAGCTGTGAGCTG
LOC_Os02g13850
Os.27983.1.S2_at--932--4751Chr02:7513082..7513106 (25 bp)
GCTGCAGCACCAGGATTAGCTAGGA
LOC_Os02g13850
Os.27983.1.S2_at--1107--6791Chr02:7513123..7513147 (25 bp)
GTTTTGAGCCCAATGCAGCAACTGT
LOC_Os02g13850
Os.27983.1.S2_at--1053--8731Chr02:7513174..7513198 (25 bp)
TGTAATCCCCTGTAGTTTGGCATTC
LOC_Os02g13850
Os.27983.1.S2_at--172--10871Chr02:7513190..7513214 (25 bp)
TTGGCATTCTGTCAGTTGTCCTCAG
LOC_Os02g13850
Os.27983.1.S2_at--962--7591Chr02:7513355..7513379 (25 bp)
GGGCACCACTTGAGTTTCTTGTTTG
LOC_Os02g13850
Os.27983.1.S2_at--283--6831Chr02:7513368..7513392 (25 bp)
GTTTCTTGTTTGTTAGCCTTGGTCA
LOC_Os02g13850
Os.27983.1.S2_at--200--4451Chr02:7513383..7513407 (25 bp)
GCCTTGGTCATCATGTATCTAGTAA
LOC_Os02g13850
Os.27983.1.S2_at--2--9031Chr02:7513536..7513560 (25 bp)
TGCAAACTAGTTTCTGCCCTTGTTA
LOC_Os02g13850
Target Sequence 
ATCGAGCGATCCTTCGATCTTGCTGCAGAACAGTATGGAGAGTGGTTACCTCCCATCTTCAAGCTCCCCTTCTTCAAAGC
TGTGAGCTGCAGCACCAGGATTAGCTAGGATGAAATGTTGGCAATTGTTTTGAGCCCAATGCAGCAACTGTACATATGCA
TATGCATTTGCTCTGTCTGTAATCCCCTGTAGTTTGGCATTCTGTCAGTTGTCCTCAGCCTTCTCATCCATGGCATATGA
CAATTGATATCAATGATGCATTGCCATGATGATATATTCTTCACAAGGGGACTGGAAGCAGATATTGGAATCTGATGCTG
CTGATGTGATGGTACATATGAATTGAGCAACTTCTCAGGGGCACCACTTGAGTTTCTTGTTTGTTAGCCTTGGTCATCAT
GTATCTAGTAAATGCAATGTACAACTAATCTGTGCAAATGTGGATATCTAGTAAGTTTTTTTTTTTCTTTTCTTTTCTAG
CTAGGAAGGTTATTGTTTGGTGGGCAAGTAGAGAAGACATGTAACATAATAACAGTTCAGTGCAAACTAGTTTCTGCCCT
TGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27983.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis