Browse Element(s) Details


Os.11252.1.S1_at

Description gb:AK102380.1
DB_XREF= gi:32987589
TID=Os.11252.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092A09, full insert sequence.
FL= gb:AK102380.1 gb:AK059791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3716011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g37130Os.8246.1.S1_at11/112+22439133..22443096expressed protein
LOC_Os02g37140Os.20122.1.S1_at10/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37140Os.3774.2.S1_x_at1/112+22446828..22451878pentatricopeptide, putative, expressed
LOC_Os02g37150Os.11965.1.S1_at11/112+22453522..22456886expressed protein
LOC_Os02g37160Os.11252.1.S1_at11/112+22462319..22463919heavy metal-associated domain containing protein, expressed
LOC_Os02g37170OsAffx.2888.1.S1_at11/112+22465807..22466241hypothetical protein
LOC_Os02g37180Os.49112.1.S1_at9/112+22468765..22469820expressed protein
LOC_Os02g37190Os.7108.1.S1_at11/112+22471921..22473077expressed protein
LOC_Os02g37200Os.54430.1.S1_at2/112+22475779..22476610expressed protein
LOC_Os02g37210OsAffx.2889.1.S1_at11/112+22480288..22480518hypothetical protein
LOC_Os02g37220NANA2+22482259..22485830transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g37230OsAffx.15404.1.S1_at11/112+22487942..22489234hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11252.1.S1_at--288--8551Chr02:22462780..22462804 (25 bp)
TGGAGAAGCACGACTACCACCCCAT
LOC_Os02g37160
Os.11252.1.S1_at--1100--5151Chr02:22462663..22462687 (25 bp)
GCAAGACCTTCAAGGCGGTGTCCCG
LOC_Os02g37160
Os.11252.1.S1_at--866--1371Chr02:22462621..22462645 (25 bp)
AGAGCGACAGCAACGCCTGCTGCAT
LOC_Os02g37160
Os.11252.1.S1_at--183--4771Chr02:22462603..22462627 (25 bp)
GCTGCATTCTCTAGCACCAAATTAA
LOC_Os02g37160
Os.11252.1.S1_at--672--8831Chr02:22462530..22462554 (25 bp)
TGATTTTGCTTGTTGCTTTCTTGCC
LOC_Os02g37160
Os.11252.1.S1_at--537--10691Chr02:22462510..22462534 (25 bp)
TTGCCTTGTTCTTTTCCATTTTTGA
LOC_Os02g37160
Os.11252.1.S1_at--965--5311Chr02:22462487..22462511 (25 bp)
GAAGGTCGTTAACCTTTTGCTGCTT
LOC_Os02g37160
Os.11252.1.S1_at--190--10291Chr02:22462472..22462496 (25 bp)
TTTGCTGCTTTCTTTTGCGGTTAAT
LOC_Os02g37160
Os.11252.1.S1_at--915--4671Chr02:22462456..22462480 (25 bp)
GCGGTTAATTAATTTGGCAGCTTTT
LOC_Os02g37160
Os.11252.1.S1_at--616--4891Chr02:22462437..22462461 (25 bp)
GCTTTTGCTGCACAACCTAGTGAAT
LOC_Os02g37160
Os.11252.1.S1_at--890--2531Chr02:22462363..22462387 (25 bp)
AACTCTGTTACTGCTTGGATTTCTT
LOC_Os02g37160
Target Sequence 
TGGAGAAGCACGACTACCACCCCATGAACCACTCCACCACCACCAAGAAGAAGACCACCACCACCACCACCACCACCGGC
GCCGGCACCGGCCGCGCCGCCGCCGCAGCCGCCGGCGGCAAGACCTTCAAGGCGGTGTCCCGCTCCCGCCGCCACCACGA
GAGCGACAGCAACGCCTGCTGCATTCTCTAGCACCAAATTAATCTCGATCCATAAAATTACCTATATATGTGCATGCATG
TACATATGTGTGATTTTGCTTGTTGCTTTCTTGCCTTGTTCTTTTCCATTTTTGAAGGTCGTTAACCTTTTGCTGCTTTC
TTTTGCGGTTAATTAATTTGGCAGCTTTTGCTGCACAACCTAGTGAATTAACCATGTATAATAATAAAACTGTATATCGT
AAAAACTGTACCTGTAAAACTCTGTTACTGCTTGGATTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis