Browse Element(s) Details


Os.11260.1.S1_at

Description gb:AK102039.1
DB_XREF= gi:32987248
TID=Os.11260.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081F22, full insert sequence.
FL= gb:AK102039.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3167011/11plasma membrane associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31620Os.10058.1.S1_at10/115+18325341..18326315EF hand family protein, expressed
LOC_Os05g31630OsAffx.26950.1.S1_at6/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.24493.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31630OsAffx.16522.1.S1_at1/115+18336756..18342100transposon protein, putative, Mutator sub-class
LOC_Os05g31640OsAffx.27108.2.S1_s_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31640OsAffx.27108.2.S1_at11/115+18342383..18343544hypothetical protein
LOC_Os05g31650OsAffx.14904.1.S1_at11/115+18344865..18345278hypothetical protein
LOC_Os05g31660OsAffx.27109.1.S1_at10/115+18346870..18347692expressed protein
LOC_Os05g31670Os.11260.1.S1_at11/115+18348218..18349149plasma membrane associated protein, putative, expressed
LOC_Os05g31680Os.27416.1.S1_at6/115+18352170..18356265expressed protein
LOC_Os05g31690Os.55351.1.S1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.25394.1.A1_at11/115+18367037..18370882expressed protein
LOC_Os05g31690Os.55351.1.S1_x_at8/115+18367037..18370882expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11260.1.S1_at--1062--4511Chr05:18348535..18348559 (25 bp)
GCCGCGGCCAGGGTCTAACTGAATT
LOC_Os05g31670
Os.11260.1.S1_at--211--9531Chr05:18348522..18348546 (25 bp)
TCTAACTGAATTTGACCCCGACACA
LOC_Os05g31670
Os.11260.1.S1_at--488--512Chr11:17180838..17180917 (24 bp)
ATCGATCGATGCCATCCATCATGCA
NONE
Os.11260.1.S1_at--1142--3551Chr05:18348474..18348498 (25 bp)
CATCATGCACACGACTGCCTATATA
LOC_Os05g31670
Os.11260.1.S1_at--798--5711Chr05:18348462..18348486 (25 bp)
GACTGCCTATATATCTCGGTGTGAT
LOC_Os05g31670
Os.11260.1.S1_at--1152--3971Chr05:18348446..18348470 (25 bp)
CGGTGTGATCGAGCTTTGATTTTCT
LOC_Os05g31670
Os.11260.1.S1_at--546--8831Chr05:18348430..18348454 (25 bp)
TGATTTTCTCGTAATTTCTTCACTT
LOC_Os05g31670
Os.11260.1.S1_at--307--851Chr05:18348371..18348395 (25 bp)
ATGGCAATGCACGAACAACGCTGTT
LOC_Os05g31670
Os.11260.1.S1_at--217--2611Chr05:18348355..18348379 (25 bp)
AACGCTGTTCATATACTCTCCGTAT
LOC_Os05g31670
Os.11260.1.S1_at--442--3771Chr05:18348340..18348364 (25 bp)
CTCTCCGTATGTAAACTTCTGTTCT
LOC_Os05g31670
Os.11260.1.S1_at--283--3871Chr05:18348322..18348346 (25 bp)
CTGTTCTCTGTATCGACGTTCGTAA
LOC_Os05g31670
Target Sequence 
GCCGCGGCCAGGGTCTAACTGAATTTGACCCCGACACACCGGCCAATCGATCGATGCCATCCATCATGCACACGACTGCC
TATATATCTCGGTGTGATCGAGCTTTGATTTTCTCGTAATTTCTTCACTTTGTGTTTCCCGCTCGTGCATTGCTGCTAGA
TGCAATGGCAATGCACGAACAACGCTGTTCATATACTCTCCGTATGTAAACTTCTGTTCTCTGTATCGACGTTCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis