Browse Element(s) Details


Os.11312.1.S1_s_at

Description gb:AU030870
DB_XREF= gi:3766760
DB_XREF=AU030870
CLONE=E60364_2Z
TID=Os.11312.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=2
UG=Os.11312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative exonuclease (OSJNBa0060A14.21), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2673011/11exonuclease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26670OsAffx.30548.1.S1_at11/1110+13596953..13598170expressed protein
LOC_Os10g26680Os.11818.1.S1_at11/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26680Os.39588.1.A1_x_at2/1110+13601475..13603859Pectinesterase family protein, expressed
LOC_Os10g26690Os.46494.1.S1_at11/1110+13606147..13608140ribosomal protein L32 containing protein, expressed
LOC_Os10g26700Os.9009.1.S1_x_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26700Os.9009.1.S1_at11/1110+13608611..13609669YGL010w, putative, expressed
LOC_Os10g26710OsAffx.6776.1.S1_at11/1110+13610669..13611054hypothetical protein
LOC_Os10g26720Os.51603.1.S1_at1/1110+13614800..13620101exonuclease family protein, expressed
LOC_Os10g26730Os.11312.1.S1_s_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26730Os.11312.1.S1_at11/1110+13623053..13626656exonuclease family protein, putative, expressed
LOC_Os10g26740OsAffx.6777.1.S1_at10/1110+13633970..13635010hypothetical protein
LOC_Os10g26750OsAffx.18419.1.S1_at9/1110+13647037..13648029hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11312.1.S1_s_at--796--3911Chr10:13626315..13626339 (25 bp)
CTGGACTCTTGGTTTGTTCGAGGGA
LOC_Os10g26730
Os.11312.1.S1_s_at--309--2451Chr10:13626385..13626409 (25 bp)
AAAATGCTGGTATCCGGCTGGTTGC
LOC_Os10g26730
Os.11312.1.S1_s_at--368--6911Chr10:13626394..13626418 (25 bp)
GTATCCGGCTGGTTGCTAAGAAGCT
LOC_Os10g26730
Os.11312.1.S1_s_at--1010--4831Chr10:13626408..13626432 (25 bp)
GCTAAGAAGCTGGTTGTACAATCCA
LOC_Os10g26730
Os.11312.1.S1_s_at--850--7911Chr10:13626419..13626443 (25 bp)
GGTTGTACAATCCAAATAGCATCGG
LOC_Os10g26730
Os.11312.1.S1_s_at--890--251Chr10:13626434..13626458 (25 bp)
ATAGCATCGGACTAACTGCTTATGA
LOC_Os10g26730
Os.11312.1.S1_s_at--838--2551Chr10:13626447..13626471 (25 bp)
AACTGCTTATGATCCTAGTGCTAGA
LOC_Os10g26730
Os.11312.1.S1_s_at--1019--4291Chr10:13626460..13626484 (25 bp)
CCTAGTGCTAGAAACTAACTCTTGC
LOC_Os10g26730
Os.11312.1.S1_s_at--449--3731Chr10:13626486..13626510 (25 bp)
CTAATTTAGTGGTGTTAGCCAGATG
LOC_Os10g26730
Os.11312.1.S1_s_at--764--7731Chr10:13626496..13626520 (25 bp)
GGTGTTAGCCAGATGTAAATAATTC
LOC_Os10g26730
Os.11312.1.S1_s_at--835--3511Chr10:13626550..13626574 (25 bp)
CATGTTGATCCTGAACTAGGAATTT
LOC_Os10g26730
Target Sequence 
CTGGACTCTTGGTTTGTTCGAGGGAACATGGTGGACGCATTCTTCTCTCTGGAACTATATGACTACGAAGAAAATGCTGG
TATCCGGCTGGTTGCTAAGAAGCTGGTTGTACAATCCAAATAGCATCGGACTAACTGCTTATGATCCTAGTGCTAGAAAC
TAACTCTTGCACTAATTTAGTGGTGTTAGCCAGATGTAAATAATTCAAAGTGTTGATTAGATCTGACCAGCAGCACATGT
TGATCCTGAACTAGGAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11312.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis