Browse Element(s) Details


Os.11370.1.S1_at

Description gb:AK102327.1
DB_XREF= gi:32987536
TID=Os.11370.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090L02, full insert sequence.
FL= gb:AK102327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1641010/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16390Os.10906.1.S1_at11/1111+9033734..9037297expressed protein
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed
LOC_Os11g16440OsAffx.18880.1.S1_at11/1111+9073304..9074159hypothetical protein
LOC_Os11g16450NANA11+9076526..9079245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16460OsAffx.31000.1.S1_at9/1111+9080626..90839352-oxoglutarate-dependent dioxygenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0042335biological_processcuticle biosynthesis
GO:0016491molecular_functionoxidoreductase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.11370.1.S1_at--23--871Chr11:9054180..9054204 (25 bp)
ATGGCTATTTTTCTTCTCTGCGCTC
LOC_Os11g16410
Os.11370.1.S1_at--800--9511NONE
TCTCTGCGCTCTGAGTTATGTACAA
NONE
Os.11370.1.S1_at--623--8811Chr11:9054851..9054875 (25 bp)
TGTTGTCTGTCCTGGGCCGATCGAA
LOC_Os11g16410
Os.11370.1.S1_at--913--8791Chr11:9055396..9055420 (25 bp)
TGTTGCAGCAACTCACGGACTAAAA
LOC_Os11g16410
Os.11370.1.S1_at--282--7951Chr11:9055428..9055844 (25 bp)
GGATATCATATCAGCCTGTGCTAGG
LOC_Os11g16410
Os.11370.1.S1_at--289--7771Chr11:9055857..9055881 (25 bp)
GGTGCAATACATGCCGACGGTTGGT
LOC_Os11g16410
Os.11370.1.S1_at--321--1931Chr11:9055873..9055897 (25 bp)
ACGGTTGGTCTCTGGCTTATGGACA
LOC_Os11g16410
Os.11370.1.S1_at--710--5191Chr11:9056560..9056584 (25 bp)
GCAATGCGTACGGTTGGAATCTCCT
LOC_Os11g16410
Os.11370.1.S1_at--8--8211Chr11:9056575..9056599 (25 bp)
GGAATCTCCTTTTCGGTGGCAAGAA
LOC_Os11g16410
Os.11370.1.S1_at--883--1951Chr11:9056695..9056719 (25 bp)
ACTGTTACAGTAGCACCTTACCTAA
LOC_Os11g16410
Os.11370.1.S1_at--549--8071Chr11:9056740..9056764 (25 bp)
GGAGCCCTTGATGAACGTCTGTTAA
LOC_Os11g16410
Target Sequence
ATGGCTATTTTTCTTCTCTGCGCTCTGAGTTATGTACAAAAGGCATTAAGGTTACTGTTGTCTGTCCTGGGCCGATCGAA
GCACCCCAATCTTNTGGTGCAACCTCTTCATCACAAAAACCATCTTCTGAGAAACGTGTTCCAGTTGAAAGATGCGCTGA
ACTGACAATTGTTGCAGCAACTCACGGACTAAAAGAAGCATGGATATCATATCAGCCTGTGCTAGGGGTTATGTACTTGG
TGCAATACATGCCGACGGTTGGTCTCTGGCTTATGGACAAGGTTGGTGCAAAGCGGCTGGATGTAGCAGCAAAGAAAGGC
AATGCGTACGGTTGGAATCTCCTTTTCGGTGGCAAGAAGTCAGCATGATGAAGTTGTCCAATAATAGGGGAGTCAAAATG
GCTGTATAAATTTGTGGATTCTGAACATACGGATTTTGGTATTTACTTTTACTACTGTTACAGTAGCACCTTACCTAAAC
AAGTTCTCGAATTCTAAAGGAGCCCTTGATGAACGTCTGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis