Browse Element(s) Details


Os.11373.1.S1_at

Description gb:AK069332.1
DB_XREF= gi:32979356
TID=Os.11373.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11373 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010L17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010L17, full insert sequence.
FL= gb:AK069332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2643011/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26370NANA3+15054822..15055388Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g26380Os.14919.1.S1_at5/113+15056464..15059399hypothetical protein
LOC_Os03g26380Os.56216.1.S1_at2/113+15056464..15059399hypothetical protein
LOC_Os03g26390NANA3+15060630..15066767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11373.1.S1_at--539--8991Chr03:15079628..15079652 (25 bp)
TGAAGCACGGCGGACTCTGCCTCGA
LOC_Os03g26430
Os.11373.1.S1_at--660--5711Chr03:15079616..15079640 (25 bp)
GACTCTGCCTCGAGACGCAGGACTA
LOC_Os03g26430
Os.11373.1.S1_at--295--3311Chr03:15079561..15079585 (25 bp)
CACCGAGATCTACCGCAAGGGCCAG
LOC_Os03g26430
Os.11373.1.S1_at--635--1091Chr03:15079544..15079568 (25 bp)
AGGGCCAGGAGTACAAGCACTACAT
LOC_Os03g26430
Os.11373.1.S1_at--577--1471Chr03:15079529..15079553 (25 bp)
AGCACTACATGCTCTACAAGTTCTC
LOC_Os03g26430
Os.11373.1.S1_at--763--2211Chr03:15079514..15079538 (25 bp)
ACAAGTTCTCTCTCGCCAAGAAGTA
LOC_Os03g26430
Os.11373.1.S1_at--411--5711Chr03:15079480..15079504 (25 bp)
GACGTTCGTCGTAATCAAATCAAGA
LOC_Os03g26430
Os.11373.1.S1_at--979--10131Chr03:15079400..15079424 (25 bp)
TATGCTAGTAGTACACTTAGGTGAT
LOC_Os03g26430
Os.11373.1.S1_at--950--7391Chr03:15079380..15079404 (25 bp)
GTGATCGGTATGAAGCTTACGTGAT
LOC_Os03g26430
Os.11373.1.S1_at--562--6491Chr03:15079345..15079369 (25 bp)
GATTAACGTGCCAAATAATTCGCAA
LOC_Os03g26430
Os.11373.1.S1_at--141--111Chr03:15079328..15079352 (25 bp)
ATTCGCAAAAGAGAGCAGCACATGT
LOC_Os03g26430
Target Sequence 
TGAAGCACGGCGGACTCTGCCTCGAGACGCAGGACTACCCGGACGCCGTCCACAACGCCAAGTTCCCCACCGAGATCTAC
CGCAAGGGCCAGGAGTACAAGCACTACATGCTCTACAAGTTCTCTCTCGCCAAGAAGTAGATTATTAAGACGTTCGTCGT
AATCAAATCAAGAATTCAAGATAATTATTAGCCTACATGGTTTTTGTGAGCGATTATGTATCTTAGATTATGCTAGTAGT
ACACTTAGGTGATCGGTATGAAGCTTACGTGATTTTAGATGATGATTAACGTGCCAAATAATTCGCAAAAGAGAGCAGCA
CATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis