Browse Element(s) Details


Os.11388.1.S1_at

Description gb:AK105635.1
DB_XREF= gi:32990844
TID=Os.11388.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11388 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D11, full insert sequence.
FL= gb:AK101066.1 gb:AK105635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1804411/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g17990Os.46012.3.S1_x_at5/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.2.S1_x_at3/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.46012.3.S1_at2/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g17990Os.54691.1.S1_x_at1/1111+10085974..10091655retrotransposon protein, putative, unclassified
LOC_Os11g18000OsAffx.31034.1.S1_at10/1111+10094394..10097516hypothetical protein
LOC_Os11g18010OsAffx.18910.1.S1_at11/1111+10106236..10107068hypothetical protein
LOC_Os11g18020NANA11+10109007..10109294hypothetical protein
LOC_Os11g18044Os.11388.1.S1_at11/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.7137.1.S1_at7/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18044OsAffx.18909.1.S1_x_at1/1111+10111373..10121816POT family protein, expressed
LOC_Os11g18070OsAffx.28025.3.S1_at11/1111+10134698..10137988hypothetical protein
LOC_Os11g18070Os.20978.1.S1_at1/1111+10134698..10137988hypothetical protein
LOC_Os11g18080OsAffx.31892.1.S1_x_at5/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_x_at3/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.6363.1.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11388.1.S1_at--777--431Chr11:10121375..10121399 (25 bp)
ATCTTCTACTGTATCCTCGGTGTAT
LOC_Os11g18044
Os.11388.1.S1_at--415--6911Chr11:10121385..10121409 (25 bp)
GTATCCTCGGTGTATCAGCATGGCT
LOC_Os11g18044
Os.11388.1.S1_at--809--7431Chr11:10121394..10121418 (25 bp)
GTGTATCAGCATGGCTCGGCAGCCT
LOC_Os11g18044
Os.11388.1.S1_at--1053--7771Chr11:10121428..10121452 (25 bp)
GGTCACGAACCGTGTCACCCAGCGA
LOC_Os11g18044
Os.11388.1.S1_at--159--8391Chr11:10121542..10121566 (25 bp)
GGCGCTGGTGATCTACGTGTTCTTC
LOC_Os11g18044
Os.11388.1.S1_at--1060--3631Chr11:10121563..10121587 (25 bp)
CTTCGCGAGGAGGTATGTATATAGG
LOC_Os11g18044
Os.11388.1.S1_at--583--671Chr11:10121589..10121613 (25 bp)
ATGACCAGAGGGTTGTGGCCCAAGA
LOC_Os11g18044
Os.11388.1.S1_at--200--8211Chr11:10121634..10121658 (25 bp)
GGAATGGTATGGCTGTGATCTAAAC
LOC_Os11g18044
Os.11388.1.S1_at--340--6931Chr11:10121640..10121664 (25 bp)
GTATGGCTGTGATCTAAACTTGAAA
LOC_Os11g18044
Os.11388.1.S1_at--142--2971Chr11:10121746..10121770 (25 bp)
AATGGAGGAACTTCATTGTGAAATT
LOC_Os11g18044
Os.11388.1.S1_at--221--9751Chr11:10121771..10121795 (25 bp)
TAATAAGACACTATCCAGGAGAAAG
LOC_Os11g18044
Target Sequence 
ATCTTCTACTGTATCCTCGGTGTATCAGCATGGCTCGGCAGCCTTCTCATCCAGGTCACGAACCGTGTCACCCAGCGAAC
CAACGGCNGGAGGGTGGCTGGATGGGGCCAATTTGAACAAGGGCAAGCTCGACCGGTTNCTATGTCGTCCTCTGCATCAT
CGAGGTGGTGGCGCTGGTGATCTACGTGTTCTTCGCGAGGAGGTATGTATATAGGAATGACCAGAGGGTTGTGGCCCAAG
AGCAGAGGAAGGGTGACACGGGGAATGGTATGGCTGTGATCTAAACTTGAAATGAAATGAGTCGTGTTTATATTTNCATG
GATGTAACGATATATATGGTAGTAATAGTAAATAATTTGGTGGTACGAGGAGAAATGGAGGAACTTCATTGTGAAATTTA
ATAAGACACTATCCAGGAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11388.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis