Browse Element(s) Details


Os.11408.1.S2_at

Description gb:AK100579.1
DB_XREF= gi:32985788
TID=Os.11408.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105L14, full insert sequence.
FL= gb:AK058661.1 gb:AK109315.1 gb:AK100579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3710011/11Phospholipase D delta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37040OsAffx.30162.1.S1_at11/119+21365910..21369912expressed protein
LOC_Os09g37050Os.51002.1.S1_at10/119+21370433..21371895RING-H2 finger protein ATL2B, putative, expressed
LOC_Os09g37060OsAffx.30725.5.S1_x_at11/119+21375332..21377938transposon protein, putative, unclassified, expressed
LOC_Os09g37070OsAffx.18022.1.S1_at11/119+21381175..21382806pentatricopeptide, putative
LOC_Os09g37080Os.53581.1.S1_at11/119+21385537..21386617expressed protein
LOC_Os09g37090OsAffx.30163.1.S1_at11/119+21389834..21390046hypothetical protein
LOC_Os09g37100Os.11408.1.S2_at11/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37100Os.11408.1.S1_at10/119+21391293..21397466Phospholipase D delta, putative, expressed
LOC_Os09g37110OsAffx.30164.1.S1_at11/119+21398391..21401460hypothetical protein
LOC_Os09g37120OsAffx.6501.1.S1_x_at11/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37120OsAffx.13673.1.S1_x_at1/119+21408790..21410016Ornithine decarboxylase, putative, expressed
LOC_Os09g37130OsAffx.2382.1.S1_x_at1/119+21417852..21418253hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0012501biological_processprogrammed cell death
GO:0005886cellular_componentplasma membrane
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11408.1.S2_at--9--571Chr09:21396631..21396869 (25 bp)
ATCCTCGCGGTCAGGTATACGGGTA
LOC_Os09g37100
Os.11408.1.S2_at--100--7671Chr09:21396865..21396889 (25 bp)
GGGTATAGAACTTCCCTCTGGGCAG
LOC_Os09g37100
Os.11408.1.S2_at--427--4191Chr09:21396878..21396902 (25 bp)
CCCTCTGGGCAGAGCATCTTGGGAT
LOC_Os09g37100
Os.11408.1.S2_at--770--3611Chr09:21396895..21396919 (25 bp)
CTTGGGATGGTTGATGACCTCTTCA
LOC_Os09g37100
Os.11408.1.S2_at--627--5311Chr09:21396980..21397004 (25 bp)
GAAGGTTCACCGCAGAACAACTTAT
LOC_Os09g37100
Os.11408.1.S2_at--150--7931Chr09:21397059..21397083 (25 bp)
GGTTGGTCCATTGCCAGAACACGAA
LOC_Os09g37100
Os.11408.1.S2_at--510--3011Chr09:21397082..21397106 (25 bp)
AATGCTTTCCTGACGTTGGTGGCAA
LOC_Os09g37100
Os.11408.1.S2_at--1047--1251Chr09:21397106..21397130 (25 bp)
AGATTCTTGGAGCTCCAACTTCACT
LOC_Os09g37100
Os.11408.1.S2_at--855--10511Chr09:21397125..21397149 (25 bp)
TTCACTCCCTGATACGCTAACAATG
LOC_Os09g37100
Os.11408.1.S2_at--1153--8771Chr09:21397177..21397201 (25 bp)
TGTTTTCCAGAATTGAAGCCCTTTT
LOC_Os09g37100
Os.11408.1.S2_at--631--5591Chr09:21397340..21397364 (25 bp)
GAGAAATTTTTCAGCCGTTGTAAAT
LOC_Os09g37100
Target Sequence 
ATCCTCGCGGTCAGGTATACGGGTATAGAACTTCCCTCTGGGCAGAGCATCTTGGGATGGTTGATGACCTCTTCAAGGAT
CCATCAAGTTTGGAGTGTGTAAATTATGTCAATGAAATAGCAGAAGAGAACTGGAGAAGGTTCACCGCAGAACAACTTAT
AACGTTACAAGGGCACCTCCTCAAATACCCAGTCAAGGTAGAGGCTGACGGTAAGGTTGGTCCATTGCCAGAACACGAAT
GCTTTCCTGACGTTGGTGGCAAGATTCTTGGAGCTCCAACTTCACTCCCTGATACGCTAACAATGTAACACGGTTCAAGC
AAAATATTGACATGTTTTCCAGAATTGAAGCCCTTTTTTGTTCATATTTTAAACTTTGTGATTGCTTGAAGATGGTATCG
GAGAGGAATTTGTATCATGTCTGTATAATCATCCAGAGAGGGGGTATAGGGAGAGCTCAAGCTGCTAATGGTGTCTGTAA
AGTTTGTGGCTATGTGAGAAATTTTTCAGCCGTTGTAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11408.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis