Browse Element(s) Details


Os.11416.1.S1_at

Description gb:AK059959.1
DB_XREF= gi:32969977
TID=Os.11416.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E11, full insert sequence.
FL= gb:AK059959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4361010/11oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein
LOC_Os11g43590Os.8649.1.S1_at2/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43590Os.44984.1.S1_at1/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43600Os.12932.1.S1_at11/1111+25799294..25803671Peptide chain release factor 1, putative, expressed
LOC_Os11g43610Os.11416.1.S1_at10/1111+25804034..25806008oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os11g43620Os.9003.1.S1_at10/1111+25806296..25808369small nuclear ribonucleoprotein F, putative, expressed
LOC_Os11g43630NANA11+25810516..25811441retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43640NANA11+25811841..25814722transposon protein, putative, unclassified
LOC_Os11g43650NANA11+25822907..25823676hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11416.1.S1_at--184--851Chr11:25804583..25804607 (25 bp)
ATGGAATCGCGATAGTCTCCCTTGA
LOC_Os11g43610
Os.11416.1.S1_at--75--10771Chr11:25804562..25804586 (25 bp)
TTGAGTCACCATGCGTGATGCACTT
LOC_Os11g43610
Os.11416.1.S1_at--192--5351Chr11:25804521..25804545 (25 bp)
GAAGTTCCTATCTGTGAGACACTGG
LOC_Os11g43610
Os.11416.1.S1_at--51--6031Chr11:25804497..25804521 (25 bp)
GAGAGTGTGCATGCTGAACCTACAA
LOC_Os11g43610
Os.11416.1.S1_at--234--8891Chr11:25804325..25804349 (25 bp)
TGAGGAAGCTCCTTCCATCACCAAA
LOC_Os11g43610
Os.11416.1.S1_at--910--10651Chr11:25804254..25804278 (25 bp)
TTCCGAGCCATCTTTACTGTCATAG
LOC_Os11g43610
Os.11416.1.S1_at--1099--1951Chr11:25804239..25804263 (25 bp)
ACTGTCATAGAGTTCACCTTCTTTT
LOC_Os11g43610
Os.11416.1.S1_at--415--2511Chr11:25804104..25804128 (25 bp)
AACATCGTTTTATTTCTTCCTGCTG
LOC_Os11g43610
Os.11416.1.S1_at--97--10211Chr11:25804094..25804118 (25 bp)
TATTTCTTCCTGCTGTTTTTGTTTT
LOC_Os11g43610
Os.11416.1.S1_at--1073--6791Chr11:25804074..25804098 (25 bp)
GTTTTCTGCCTGTATCGAACAACCT
LOC_Os11g43610
Os.11416.1.S1_at--902--2351Chr11:25804033..25804058 (25 bp)
AAAGCTGGCGAAAGCCTTTGATCTA
NONE
Target Sequence 
ATGGAATCGCGATAGTCTCCCTTGAGTCACCATGCGTGATGCACTTNCANTCGGGCAGAACAAGAAGTTCCTATCTGTGA
GACACTGGAGAGTGTGCATGCTGAACCTACAAANGANTCCCTGTCTACCTGAANCCCAGGGTCCCTTGNTCTNCATGTCA
NGGCGACGCNANGATACTTATGGNAAACATGANGATAAANCCGCAAGCCAGGTGCTCAGCAATGGGGTGGCAGGGAGCTT
GAGCAGCAGATAAGAACTTCAATTACACTGAGGAAGCTCCTTCCATCACCAAACTAATACCAGCAGAACAGTTGTCAGGA
AATTTCTCCAGTTTTTTTGTTCCGAGCCATCTTTACTGTCATAGAGTTCACCTTCTTTTTGAGATGTTGATGCTTACGAG
ATTATGATCAAATTTGGGCACCTAAATGNTTAGGTGTCTCTGTTAGCTTGTGATCAGATTTTTGTACTTCTGGTTAAGTT
GGAAACCCCAACATCGTTTTATTTCTTCCTGCTGTTTTTGTTTTCTGCCTGTATCGAACAACCTTTATGCTTTGTTAGTA
AAGCTGGCGAAAGCCTTTGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis