Browse Element(s) Details


Os.9003.1.S1_at

Description gb:AK062752.1
DB_XREF= gi:32972770
TID=Os.9003.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9003 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G04, full insert sequence.
FL= gb:AK062752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4362010/11small nuclear ribonucleoprotein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein
LOC_Os11g43590Os.8649.1.S1_at2/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43590Os.44984.1.S1_at1/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43600Os.12932.1.S1_at11/1111+25799294..25803671Peptide chain release factor 1, putative, expressed
LOC_Os11g43610Os.11416.1.S1_at10/1111+25804034..25806008oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os11g43620Os.9003.1.S1_at10/1111+25806296..25808369small nuclear ribonucleoprotein F, putative, expressed
LOC_Os11g43630NANA11+25810516..25811441retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43640NANA11+25811841..25814722transposon protein, putative, unclassified
LOC_Os11g43650NANA11+25822907..25823676hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9003.1.S1_at--335--5911Chr11:25806357..25806381 (25 bp)
GAGCTAGCTGCTCTACCTTGGAATG
LOC_Os11g43620
Os.9003.1.S1_at--1053--4811NONE
GCTCTACCTTGGAATGGCGACTGTT
NONE
Os.9003.1.S1_at--777--8491Chr11:25807683..25807707 (25 bp)
TGGACAATTCTCTGGAAACCTGGGA
LOC_Os11g43620
Os.9003.1.S1_at--284--10071Chr11:25808058..25808081 (24 bp)
TAGGTGCAACAATGTTCTGTATCTC
LOC_Os11g43620
Os.9003.1.S1_at--1028--691Chr11:25808120..25808144 (25 bp)
ATGAGATAACCTGGACCTATGCGCA
LOC_Os11g43620
Os.9003.1.S1_at--1096--8091Chr11:25808132..25808156 (25 bp)
GGACCTATGCGCAGATCGATTTGTG
LOC_Os11g43620
Os.9003.1.S1_at--123--9391Chr11:25808147..25808171 (25 bp)
TCGATTTGTGTAATATGCAGCTGAC
LOC_Os11g43620
Os.9003.1.S1_at--42--8871Chr11:25808199..25808223 (25 bp)
TGATGCACAGATTCCTTGTTGACCT
LOC_Os11g43620
Os.9003.1.S1_at--846--10671Chr11:25808210..25808234 (25 bp)
TTCCTTGTTGACCTGGATCTTAACT
LOC_Os11g43620
Os.9003.1.S1_at--279--7391Chr11:25808321..25808345 (25 bp)
GTGAGATAATATACCATTTGCCTGT
LOC_Os11g43620
Os.9003.1.S1_at--1067--191Chr11:25808336..25808360 (25 bp)
ATTTGCCTGTCGAGATGGATGACGA
LOC_Os11g43620
Target Sequence 
GAGCTAGCTGCTCTACCTTGGAATGGCGACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTG
TCATTGTCAAACTTAAGTGGGGTATGGAATACAAAGGATACCTTGTTTCTGTGGACTCTTATATGAATCTGCAGCTGGCT
AATACAGAGGAGTATATTGATGGACAATTCTCTGGAAACCTGGGAGAGATACTGATTAGGTGCAACAATGTTCTGTATCT
CNGAGGCGTTCCAGAGGATGCCGAGATAGAGGATGCAGAATGAGATAACCTGGACCTATGCGCAGATCGATTTGTGTAAT
ATGCAGCTGACATGAACAATTTAAGTGTCATGTAAAATTGATGCACAGATTCCTTGTTGACCTGGATCTTAACTATGGTC
ATGATATGGTTATATTAGGCATTGAAACTGATTTCATATTGACTAGTGTCATTGCTCAAATGTGTGAGAGATCATATTTC
GTGAGATAATATACCATTTGCCTGTCGAGATGGATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9003.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis