Browse Element(s) Details


Os.46481.2.S1_at

Description gb:AK072370.1
DB_XREF= gi:32982393
TID=Os.46481.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46481 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative gag-pol polyprotein (OSJNBa0073D04.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023073J02, full insert sequence.
FL= gb:AK072370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4356011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein
LOC_Os11g43590Os.8649.1.S1_at2/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43590Os.44984.1.S1_at1/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43600Os.12932.1.S1_at11/1111+25799294..25803671Peptide chain release factor 1, putative, expressed
LOC_Os11g43610Os.11416.1.S1_at10/1111+25804034..25806008oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os11g43620Os.9003.1.S1_at10/1111+25806296..25808369small nuclear ribonucleoprotein F, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46481.2.S1_at--248--2931Chr11:25780018..25780042 (25 bp)
AAGGAACTATATACATACATGTGTA
LOC_Os11g43560
Os.46481.2.S1_at--347--9872Chr11:25780003..25780027 (25 bp)
TACATGTGTATTCTCCTAAAAAGGC
LOC_Os11g43560
Os.46481.2.S1_at--1008--8652Chr11:25779999..25780023 (25 bp)
TGTGTATTCTCCTAAAAAGGCAAAA
LOC_Os11g43560
Os.46481.2.S1_at--357--2312Chr11:25779984..25780008 (25 bp)
AAAGGCAAAACTTGCAACTATGCAA
LOC_Os11g43560
Os.46481.2.S1_at--592--5151Chr11:25779971..25779995 (25 bp)
GCAACTATGCAATAATTTTGGTACT
LOC_Os11g43560
Os.46481.2.S1_at--959--9512Chr11:25779937..25779961 (25 bp)
TCTCTCCTCTCTTCTAAGTACAAAG
LOC_Os11g43560
Os.46481.2.S1_at--33--3751Chr11:25779929..25779953 (25 bp)
CTCTTCTAAGTACAAAGTTCAGTTA
LOC_Os11g43560
Os.46481.2.S1_at--88--1211Chr11:25779914..25779938 (25 bp)
AGTTCAGTTAAGCTATAGGTTTCCA
LOC_Os11g43560
Os.46481.2.S1_at--245--6771Chr11:25779908..25779932 (25 bp)
GTTAAGCTATAGGTTTCCATGGTAA
LOC_Os11g43560
Os.46481.2.S1_at--428--10171Chr11:25779901..25779925 (25 bp)
TATAGGTTTCCATGGTAACTAGCAT
LOC_Os11g43560
Os.46481.2.S1_at--1070--3476Chr09:16125023..16125042 (20 bp)
CATGGTAACTAGCATGGAGGCCCGC
NONE
Target Sequence 
AAGGAACTATATACATACATGTGTATTCTCCTAAAAAGGCAAAACTTGCAACTATGCAATAATTTTGGTACTCTCTCTCT
CTCTCTCCTCTCTTCTAAGTACAAAGTTCAGTTAAGCTATAGGTTTCCATGGTAACTAGCATGGAGGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46481.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis