Browse Element(s) Details


Os.33665.1.S1_at

Description gb:AK099612.1
DB_XREF= gi:32984821
TID=Os.33665.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.33665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013049P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013049P13, full insert sequence.
FL= gb:AK099612.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4351011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43470NANA11+25743286..25744374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43480OsAffx.31457.1.S1_at11/1111+25747182..25750328hypothetical protein
LOC_Os11g43490NANA11+25751955..25752653hypothetical protein
LOC_Os11g43500OsAffx.31458.1.S1_at11/1111+25753361..25754635Leucine Rich Repeat family protein
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33665.1.S1_at--472--10691Chr11:25759618..25759642 (25 bp)
TTGCCACCATATTTTTGCTACCTTG
LOC_Os11g43510
Os.33665.1.S1_at--1029--5671Chr11:25759650..25759674 (25 bp)
GACATATCACCACTTCTCGAGAGAG
LOC_Os11g43510
Os.33665.1.S1_at--86--7971Chr11:25759823..25759847 (25 bp)
GGATCAGGCGAGGACCCAACATGCA
LOC_Os11g43510
Os.33665.1.S1_at--488--5051Chr11:25759845..25759942 (25 bp)
GCAGCAGATCGGTCTACGGCAGAAG
LOC_Os11g43510
Os.33665.1.S1_at--944--6431Chr11:25759950..25759974 (25 bp)
GATCATCTTGAATACTACGGTGTCT
LOC_Os11g43510
Os.33665.1.S1_at--215--8731Chr11:25759970..25759994 (25 bp)
TGTCTCACTACACGCTGATTCAAGG
LOC_Os11g43510
Os.33665.1.S1_at--348--6511Chr11:25760077..25760101 (25 bp)
GATATCCGCAAGAGTGGCACGCCGT
LOC_Os11g43510
Os.33665.1.S1_at--1143--8231Chr11:25760092..25760116 (25 bp)
GGCACGCCGTGGAATCTATTTAACC
LOC_Os11g43510
Os.33665.1.S1_at--610--5231Chr11:25760103..25760127 (25 bp)
GAATCTATTTAACCCTTTGCCCGAG
LOC_Os11g43510
Os.33665.1.S1_at--544--9771Chr11:25760173..25760197 (25 bp)
TAATGTAGGTGTACTGGGTTCTCCA
LOC_Os11g43510
Os.33665.1.S1_at--606--6951Chr11:25760292..25760316 (25 bp)
GTAGACACGCCTTTATTGATGTACA
LOC_Os11g43510
Target Sequence 
TTGCCACCATATTTTTGCTACCTTGGCGANATGGACATATCACCACTTCTCGAGAGAGNTTTGGCTTCATGAGACCATAG
TAGGAAATGTAGTTACTAGGAATGAGACCATCTGTGATGGATCAGGCGAGGACCCAACATGCAGCAGATCGGTCTACGGC
AGAAGTGTTGCAGATCATCTTGAATACTACGGTGTCTCACTACACGCTGATTCAAGGGGAACCTGTCAATTTGTGATTGG
CTCAACCAACATGGCATATGGTACCATTCTTGAAGTTGATAGAACCATCATCATGACAAGATATCCGCAAGAGTGGCACG
CCGTGGAATCTATTTAACCCTTTGCCCGAGGGTAAATTGTATATAATTATTTTCCTTTTGTGCATATAGCTCATGTAATG
TAGGTGTACTGGGTTCTCCAGGAGCTCTCCTGAGGATAAGGAGAGGTTTCATTTTTAATATGTGCCCCCCTTTACTCAAG
TGAGAATTGTACATGGAAGCTCCATATGAACATTGTAGACACGCCTTTATTGATGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis