Browse Element(s) Details


Os.55402.1.S1_at

Description gb:AK108017.1
DB_XREF= gi:32993226
TID=Os.55402.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.55402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-H11, full insert sequence.
FL= gb:AK108017.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4352011/11Glutaredoxin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43470NANA11+25743286..25744374transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43480OsAffx.31457.1.S1_at11/1111+25747182..25750328hypothetical protein
LOC_Os11g43490NANA11+25751955..25752653hypothetical protein
LOC_Os11g43500OsAffx.31458.1.S1_at11/1111+25753361..25754635Leucine Rich Repeat family protein
LOC_Os11g43510Os.33665.1.S1_at11/1111+25756948..25760360Lipase family protein, expressed
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55402.1.S1_at--165--3751Chr11:25763224..25763248 (25 bp)
CTCAAGCACACAGTGATCGAGAAGC
LOC_Os11g43520
Os.55402.1.S1_at--325--5971Chr11:25763242..25763266 (25 bp)
GAGAAGCTACTGGAAGCATCTAGAA
LOC_Os11g43520
Os.55402.1.S1_at--449--3971Chr11:25763504..25763528 (25 bp)
CGGTGTTCGTCGGAGGCAACCTCGT
LOC_Os11g43520
Os.55402.1.S1_at--58--4591Chr11:25763599..25763623 (25 bp)
GCGCTCTGGCTCTAGTGTATATACG
LOC_Os11g43520
Os.55402.1.S1_at--1074--6871Chr11:25763615..25763639 (25 bp)
GTATATACGTGTGTGCATGCAGAAT
LOC_Os11g43520
Os.55402.1.S1_at--447--5051Chr11:25763633..25763657 (25 bp)
GCAGAATGCAGTTAATGCAGCGAAT
LOC_Os11g43520
Os.55402.1.S1_at--957--9031Chr11:25763648..25763672 (25 bp)
TGCAGCGAATTAAGCCAGGTTTTTT
LOC_Os11g43520
Os.55402.1.S1_at--24--9811Chr11:25763658..25763682 (25 bp)
TAAGCCAGGTTTTTTATGTCCTCCT
LOC_Os11g43520
Os.55402.1.S1_at--1052--1011Chr11:25763664..25763688 (25 bp)
AGGTTTTTTATGTCCTCCTGTGCTG
LOC_Os11g43520
Os.55402.1.S1_at--962--5331Chr11:25763730..25763754 (25 bp)
GAAGTTGTTGTAAATGTCGTCCATT
LOC_Os11g43520
Os.55402.1.S1_at--39--2992Chr11:25763742..25763766 (25 bp)
AATGTCGTCCATTTCGATAAATAAA
LOC_Os11g43520
Target Sequence 
CTCAAGCACACAGTGATCGAGAAGCTACTGGAAGCATCTAGAAGGGGTTCCAGGTCTCGATCGATGGAGANNGGNGGCGA
AGCTGGCGTCGGAGAGGGCGGTGGTGGTGTTCACGGCGAGCAACTGCGGCATGTGCCACGCCGTGACGAGCCTCCTCGTC
GGCGAGCTGGGCGTCAACGCCGCCGTGCACGAGCTCGACAAGGACCCCCGCGGCAGGGACATGGAGAGGGAGCTCGCCAG
GAGGCTCAACGGCGGCGGCGGCGGCGGCCGCGCCNTGCCGGCGGTGTTCGTCGGAGGCAACCTCGTCGGCGGCGCCAACC
GGGTCATGTCGCTCCACCTCGCCGGCGAGCTCGTCCCCATGCTCAAGAACGCCGGCGCGCTCTGGCTCTAGTGTATATAC
GTGTGTGCATGCAGAATGCAGTTAATGCAGCGAATTAAGCCAGGTTTTTTATGTCCTCCTGTGCTGATGAGAATAAATCA
AATCGATCGATCGAGTGGTGTAATGGTGAAGTTGTTGTAAATGTCGTCCATTTCGATAAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis