Browse Element(s) Details


OsAffx.7397.1.S1_at

Description tigr:9639.m04029
TID=OsAffx.7397.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43520Os.55402.1.S1_at11/1111+25763193..25763800Glutaredoxin-like family protein, expressed
LOC_Os11g43530NANA11+25769029..25769358Glutaredoxin-like family protein
LOC_Os11g43540OsAffx.8954.1.S1_x_at2/1111+25772597..25773822hypothetical protein
LOC_Os11g43540OsAffx.26507.1.S1_x_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43540Os.53905.1.S1_at1/1111+25772597..25773822hypothetical protein
LOC_Os11g43550NANA11+25778360..25778689Glutaredoxin-like family protein
LOC_Os11g43560Os.46481.2.S1_x_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43560Os.46481.2.S1_at11/1111+25779770..25784498retrotransposon protein, putative, unclassified, expressed
LOC_Os11g43570OsAffx.7397.1.S1_at11/1111+25785768..25786417hypothetical protein
LOC_Os11g43580NANA11+25787402..25787731Glutaredoxin-like family protein
LOC_Os11g43590Os.8649.1.S1_at2/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43590Os.44984.1.S1_at1/1111+25793260..25798175Kelch motif family protein, expressed
LOC_Os11g43600Os.12932.1.S1_at11/1111+25799294..25803671Peptide chain release factor 1, putative, expressed
LOC_Os11g43610Os.11416.1.S1_at10/1111+25804034..25806008oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os11g43620Os.9003.1.S1_at10/1111+25806296..25808369small nuclear ribonucleoprotein F, putative, expressed
LOC_Os11g43630NANA11+25810516..25811441retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7397.1.S1_at--876--6291Chr11:25785809..25785833 (25 bp)
GATGATGCCCGAGGACATCACTGTC
LOC_Os11g43570
OsAffx.7397.1.S1_at--1039--591Chr11:25785813..25785837 (25 bp)
ATGCCCGAGGACATCACTGTCGTTG
LOC_Os11g43570
OsAffx.7397.1.S1_at--825--8131Chr11:25785821..25785845 (25 bp)
GGACATCACTGTCGTTGAGCCAAGC
LOC_Os11g43570
OsAffx.7397.1.S1_at--4--391Chr11:25785825..25785849 (25 bp)
ATCACTGTCGTTGAGCCAAGCAAAG
LOC_Os11g43570
OsAffx.7397.1.S1_at--466--8711Chr11:25785830..25785854 (25 bp)
TGTCGTTGAGCCAAGCAAAGCTTTT
LOC_Os11g43570
OsAffx.7397.1.S1_at--1074--5851Chr11:25785837..25785861 (25 bp)
GAGCCAAGCAAAGCTTTTGCCCAGC
LOC_Os11g43570
OsAffx.7397.1.S1_at--689--1491Chr11:25785843..25785867 (25 bp)
AGCAAAGCTTTTGCCCAGCATTACA
LOC_Os11g43570
OsAffx.7397.1.S1_at--343--2691Chr11:25785847..25785871 (25 bp)
AAGCTTTTGCCCAGCATTACACCAT
LOC_Os11g43570
OsAffx.7397.1.S1_at--1143--10271Chr11:25785852..25785876 (25 bp)
TTTGCCCAGCATTACACCATAGCCA
LOC_Os11g43570
OsAffx.7397.1.S1_at--242--3311Chr11:25785858..25785882 (25 bp)
CAGCATTACACCATAGCCAATTCGC
LOC_Os11g43570
OsAffx.7397.1.S1_at--254--10491Chr11:25785863..25785887 (25 bp)
TTACACCATAGCCAATTCGCCAAGG
LOC_Os11g43570
Target Sequence 
GATGATGCCCGAGGACATCACTGTCGTTGAGCCAAGCAAAGCTTTTGCCCAGCATTACACCATAGCCAATTCGCCAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis