Browse Element(s) Details


Os.11420.1.S1_at

Description gb:AK070215.1
DB_XREF= gi:32980239
TID=Os.11420.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11420 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-305-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043K07, full insert sequence.
FL= gb:AK104207.1 gb:AK104554.1 gb:AK070215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0145011/11Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os05g01444OsAffx.26677.1.S1_x_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01444Os.55730.1.S1_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01450Os.11420.1.S1_at11/115+238114..240333Eukaryotic translation initiation factor 3 subunit 5, putative, expressed
LOC_Os05g01460Os.7299.1.S1_at11/115+241786..244487TPR Domain containing protein, expressed
LOC_Os05g01470Os.10352.1.S1_at9/115+245976..256074Methionine S-methyltransferase, putative, expressed
LOC_Os05g01480Os.12383.1.S1_at11/115+263024..265567Ras-related protein Rab11C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0008180cellular_componentsignalosome complex
GO:0008541cellular_componentproteasome regulatory particle, lid subcomplex (sensu Eukaryota)
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11420.1.S1_at--258--2791Chr05:239237..239261 (25 bp)
AAGAGATTCCCCTTGATCTGAGGAT
LOC_Os05g01450
Os.11420.1.S1_at--158--1451Chr05:238766..238790 (25 bp)
AGAAGCTCCCCAATGATCTGGAAGG
LOC_Os05g01450
Os.11420.1.S1_at--447--10551Chr05:238557..238581 (25 bp)
TTCATCTCTGATGCTGTTGCTTCAA
LOC_Os05g01450
Os.11420.1.S1_at--479--591Chr05:238533..238557 (25 bp)
ATGCCAAAATTGTCACCAGCTGCTT
LOC_Os05g01450
Os.11420.1.S1_at--819--3051Chr05:238388..238412 (25 bp)
AATCTTGCACTGGTGTACCTGTCAA
LOC_Os05g01450
Os.11420.1.S1_at--857--9971Chr05:238339..238363 (25 bp)
TAGCCGAGAAGTTGAACACCGCCGC
LOC_Os05g01450
Os.11420.1.S1_at--549--4131Chr05:238317..238341 (25 bp)
CGCCCAAATCCTGTAATTTCCATGT
LOC_Os05g01450
Os.11420.1.S1_at--801--8531Chr05:238289..238313 (25 bp)
TGGAGCATCTGGGAGTCTGACTTAA
LOC_Os05g01450
Os.11420.1.S1_at--1137--6851Chr05:238253..238277 (25 bp)
GTTTGTTTTTCATTCGCACGACTGA
LOC_Os05g01450
Os.11420.1.S1_at--1008--10251Chr05:238197..238221 (25 bp)
TTTGTACTTGTTATCTGAGGCCTAA
LOC_Os05g01450
Os.11420.1.S1_at--119--7911Chr05:238128..238152 (25 bp)
GGTTGGGTGCACTCTTGGATTAGTA
LOC_Os05g01450
Target Sequence 
AAGAGATTCCCCTTGATCTGAGGATGCTTGAAGCAGGAAAAGTTGGATTTGACATCCTGAAATCTACAATTGTGGAGAAG
CTCCCCAATGATCTGGAAGGAATGGAATCCTCCATGGAAAAGCTGTATGTCCTTATTGACGAGATCTACAAATATGTTGA
TGATGTCGTGGAGGGGCGTGTAGCACCGGACAATAAAATTGGGAGATTCATCTCTGATGCTGTTGCTTCAATGCCAAAAT
TGTCACCAGCTGCTTTTGACAAGCTTTTCAATGACAGGATTCAGGATAATCTTGCACTGGTGTACCTGTCAAGCATCACA
AGGACACAGATTAGCATAGCCGAGAAGTTGAACACCGCCGCCCAAATCCTGTAATTTCCATGTAGTTGGAGCATCTGGGA
GTCTGACTTAAAATGCTGTTTTGTTTGTTTTTCATTCGCACGACTGAAAAATTGGGATATGATGGCAGAGTATGCATTTT
TGTACTTGTTATCTGAGGCCTAAAGAAAAGAAACCATCATGTTTCAGATGATAATGTTTGTGTTGGAGGTTGGGTGCACT
CTTGGATTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11420.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis