Browse Element(s) Details


Os.11444.1.S1_at

Description gb:AK071748.1
DB_XREF= gi:32981771
TID=Os.11444.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1041F02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110K01, full insert sequence.
FL= gb:AK071748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1572011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15680OsAffx.25100.1.S1_x_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15680OsAffx.25100.1.S1_at11/113+8630550..8632277GRAS family transcription factor containing protein
LOC_Os03g15690Os.50849.1.S1_at11/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_x_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15690Os.38261.1.S1_at9/113+8635497..8639055Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g15700Os.5848.2.S1_x_at11/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15700Os.5848.1.S1_at7/113+8639284..8642074Splicing factor 3A subunit 2, putative, expressed
LOC_Os03g15710Os.33475.1.S1_at11/113+8643321..8645199Strictosidine synthase family protein, expressed
LOC_Os03g15720Os.11444.1.S1_at11/113+8647119..8650177expressed protein
LOC_Os03g15730Os.11649.1.S1_at11/113+8652651..8655595S-ribonuclease binding protein SBP1, putative, expressed
LOC_Os03g15740Os.15593.1.S1_at11/113+8658231..8661389calcium-binding EF hand family protein, putative, expressed
LOC_Os03g15750Os.33208.1.S1_at11/113+8662824..8666613Longevity-assurance protein containing protein, expressed
LOC_Os03g15760NANA3+8667439..8671132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11444.1.S1_at--1135--4131Chr03:8647256..8647280 (25 bp)
CGCGACCATGGCTTACGTCGAGAGA
LOC_Os03g15720
Os.11444.1.S1_at--415--5611Chr03:8649350..8649374 (25 bp)
GACAAACGGACAATTTGGCGGCTAA
LOC_Os03g15720
Os.11444.1.S1_at--263--8451Chr03:8649365..8649389 (25 bp)
TGGCGGCTAAGCATAATTTCTGACT
LOC_Os03g15720
Os.11444.1.S1_at--511--10311Chr03:8649381..8649405 (25 bp)
TTTCTGACTTCTTCAGGGCTATTGT
LOC_Os03g15720
Os.11444.1.S1_at--951--9631Chr03:8649393..8649417 (25 bp)
TCAGGGCTATTGTGAACTTCATCAG
LOC_Os03g15720
Os.11444.1.S1_at--1001--731Chr03:8649419..8649442 (24 bp)
ATGTTCTTCCTTACAATGTTCTCGA
LOC_Os03g15720
Os.11444.1.S1_at--32--5131Chr03:8649691..8649715 (25 bp)
GCACACTATCTGACATCCGATCTAA
LOC_Os03g15720
Os.11444.1.S1_at--677--5451Chr03:8649937..8649961 (25 bp)
GAACGTATATAATCTTCGCTGGTTA
LOC_Os03g15720
Os.11444.1.S1_at--564--6771Chr03:8649982..8650006 (25 bp)
GTTACATGTTACATCTTCTGCTTAG
LOC_Os03g15720
Os.11444.1.S1_at--689--6431Chr03:8650010..8650034 (25 bp)
GATCATCTATGCATTGTGACATTGT
LOC_Os03g15720
Os.11444.1.S1_at--286--1871Chr03:8650041..8650065 (25 bp)
ACGAGTGTAATACCCAGCACATATT
LOC_Os03g15720
Target Sequence 
CGCGACCATGGCTTACGTCGAGAGAGGTGTTGTGAAAGACAAACGGACAATTTGGCGGCTAAGCATAATTTCTGACTTCT
TCAGGGCTATTGTGAACTTCATCAGAATGTTCTTCCTTACAATGTTCTCGATTGAAAAAACAGACAGCTATAGGAAAGGG
TATGGCTCTGGTAAGAAATGGGATGGTGGGCCTGGTGGGGGAGGTCCTGGTGGTGGCCCTTATGGGGGCGGCCGCGGCGG
TGGAGGCGGCCTCCGAGGTCCTCGCACACTATCTGACATCCGATCTAACGATCAGAANNCNNNNNNNNNNNTNTNNANNN
NNCNNNGGNTNANCNGNNNNNCTNNCNNNNTNNNNNNTNNANTATGAACGACTCTAAGATCCTTTTGATGTCATTTTTTA
GGAGCAAGTCTGAATTCTGAAAATTTTAGAACGTATATAATCTTCGCTGGTTAAGCAGGATATAAGAACACTTGTTACAT
GTTACATCTTCTGCTTAGAAAGATCATCTATGCATTGTGACATTGTCAAAACACGAGTGTAATACCCAGCACATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis