Browse Element(s) Details


Os.11448.2.S1_x_at

Description gb:CB657087
DB_XREF= gi:29660812
DB_XREF=OSJNEc12C16.r
CLONE=OSJNEc12C16
TID=Os.11448.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.11448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1693011/11Presenilin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16890Os.206.1.S1_at11/111+9654761..965805760S ribosomal protein L30, putative, expressed
LOC_Os01g16900Os.207.1.S1_at10/111+9662198..96669783-isopropylmalate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os01g16910Os.43682.1.S1_at11/111+9667878..9672525mitochondrial import receptor subunit TOM40 homolog, putative, expressed
LOC_Os01g16920Os.209.1.S1_at11/111+9676606..9677661expressed protein
LOC_Os01g16930Os.11448.2.S1_x_at11/111+9679404..9680948Presenilin family protein, expressed
LOC_Os01g16940Os.24980.1.S1_at11/111+9681609..9686284Histidine biosynthesis bifunctional protein hisIE, chloroplast precursor, putative, expressed
LOC_Os01g16950Os.212.1.S1_at11/111+9687092..9688882Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g16960Os.213.1.S1_at11/111+9690805..9696595Pyruvate kinase, cytosolic isozyme, putative, expressed
LOC_Os01g16970Os.6899.1.S2_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.1.S1_a_at11/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970Os.6899.2.S1_x_at10/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.29480.1.S1_s_at3/111+9699515..9706464calmodulin-binding protein, putative, expressed
LOC_Os01g16970OsAffx.5663.1.S1_at1/111+9699515..9706464calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11448.2.S1_x_at--539--6891Chr01:9679979..9680003 (25 bp)
GTATCAGCGGCATCTGCCAACAATG
LOC_Os01g16930
Os.11448.2.S1_x_at--313--6071Chr01:9679904..9679928 (25 bp)
GAGTTCGAGATGTTCGAGTCCACCA
LOC_Os01g16930
Os.11448.2.S1_x_at--1136--6531Chr01:9679856..9679880 (25 bp)
GATTTTATCTTCTACAGCGTGCTTG
LOC_Os01g16930
Os.11448.2.S1_x_at--259--6311Chr01:9679806..9679830 (25 bp)
GATGACGGTGTATGCGTGCTACCTT
LOC_Os01g16930
Os.11448.2.S1_x_at--818--9971Chr01:9679787..9679811 (25 bp)
TACCTTGCCATCATTGCTGGGCTTG
LOC_Os01g16930
Os.11448.2.S1_x_at--353--9031Chr01:9679760..9679784 (25 bp)
TGCACCCTTATCTTGCTGTCAATAT
LOC_Os01g16930
Os.11448.2.S1_x_at--898--651Chr01:9679737..9679761 (25 bp)
ATGCAAGCATGCATTGCCTGCACTC
LOC_Os01g16930
Os.11448.2.S1_x_at--15--3911Chr01:9679697..9679721 (25 bp)
CTGGGTGTCACATTCTACTTCTTGA
LOC_Os01g16930
Os.11448.2.S1_x_at--386--9891Chr01:9679682..9679706 (25 bp)
TACTTCTTGACTCGGTTGCTGATGG
LOC_Os01g16930
Os.11448.2.S1_x_at--280--10871Chr01:9679645..9679669 (25 bp)
TTGGCTCTTCAACCAACTTGGTGAT
LOC_Os01g16930
Os.11448.2.S1_x_at--712--4091Chr01:9679439..9679463 (25 bp)
CGACTAGTTACATGCCTTGTTGTAT
LOC_Os01g16930
Target Sequence 
GTATCAGCGGCATCTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAANCTCTTCTTCAGACTCTGGTATGGAGTT
CGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCTTCTACAGCGTGCTTGTGGGGAGGGCTG
CGATGTATGATCTGATGACGGTGTATGCGTGCTACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCA
ATATGCAAGCATGCATTGCCTGCACTCCCGATCTCCATCNTGCTGGGTGTCACATTCTACTTCTTGACTCGGTTGCTGAT
GGAGCCNGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTCTGATTAATCTGCTATTGCCATTTTACATATGTGAAA
CAAGAAAGAGGAAATGATTGGCATTTTTTTTCAGTGACTGGTANTTTTGTTGGTCACTTCGTAGANCAGTCATATGTATT
TANCATTAGGAAATGTTGTTACAAGTTCAANACCTTAGGCTCTTAAGGTANTCTCAGGGANCGACTAGTTACATGCCTTG
TTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11448.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis