Browse Element(s) Details


Os.11496.1.S1_at

Description gb:AK062756.1
DB_XREF= gi:32972774
TID=Os.11496.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G08, full insert sequence.
FL= gb:AK062756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g483906/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48330OsAffx.10596.1.S1_x_at1/113+27473796..27476878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48340OsAffx.20387.1.S1_x_at1/113+27477131..27477541retrotransposon protein, putative, unclassified
LOC_Os03g48350NANA3+27478065..27479993transposon protein, putative, unclassified
LOC_Os03g48360NANA3+27480830..27483594retrotransposon protein, putative, unclassified
LOC_Os03g48364NANA3+27484043..27484438transposon protein, putative, unclassified
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein
LOC_Os03g48380Os.38219.1.A1_at6/113+27495476..27499250expressed protein
LOC_Os03g48390Os.11496.1.S1_at6/113+27501330..27503409expressed protein
LOC_Os03g48400OsAffx.13404.1.S1_at11/113+27504978..27506238hypothetical protein
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11496.1.S1_at--523--1291Chr03:27501367..27501391 (25 bp)
AGATCCAGAGGCTCGGCCAGAAGCA
LOC_Os03g48390
Os.11496.1.S1_at--389--5391Chr03:27501386..27501410 (25 bp)
GAAGCAGCCCGATGGATCCTACAAG
LOC_Os03g48390
Os.11496.1.S1_at--854--10611Chr03:27503233..27503257 (25 bp)
TTCGGTGTTATCTTCAACGATGACC
LOC_Os03g48390
Os.11496.1.S1_at--132--2591Chr03:27503248..27503272 (25 bp)
AACGATGACCGTTGTGCAAACATAT
LOC_Os03g48390
Os.11496.1.S1_at--1018--191Chr03:27503271..27503295 (25 bp)
ATTTGAAGCACTAGTCGGCACCTTG
LOC_Os03g48390
Os.11496.1.S1_at--145--731Chr03:27503363..27503387 (25 bp)
ATGTTGAGATAACCCTGTTGCCTCC
LOC_Os03g48390
Os.11496.1.S1_at--901--2711Chr03:27503416..27503440 (25 bp)
AAGCATCTGCGAGCCTCTGGTGTTA
NONE
Os.11496.1.S1_at--532--7451Chr03:27503467..27503491 (25 bp)
GTGTCTAGATTCTCATGAACCATTT
NONE
Os.11496.1.S1_at--336--10251Chr03:27503489..27503513 (25 bp)
TTTGATATTCGAAGCGGATGCCTAT
NONE
Os.11496.1.S1_at--519--6351Chr03:27503505..27503529 (25 bp)
GATGCCTATCGCGTGATGTATGAAC
NONE
Os.11496.1.S1_at--871--3691Chr03:27503529..27503553 (25 bp)
CTATGGGTATGCAGTTTCTTGGACA
NONE
Target Sequence 
AGATCCAGAGGCTCGGCCAGAAGCAGCCCGATGGATCCTACAAGGTAACTTTCGGTGTTATCTTCAACGATGACCGTTGT
GCAAACATATTTGAAGCACTAGTCGGCACCTTGCGGGCTGCCAAGAAGAGAAAAATTGTTAAGTATGATGGTGAGCTGCT
TCTACAGGGGGCTCATGACAATGTTGAGATAACCCTGTTGCCTCCTCCAGCGGTCGCTGCTGCCTGAAGAGGGAAGCATC
TGCGAGCCTCTGGTGTTAAGGCGTTGATATGCATATAATCTATTGTGTCTAGATTCTCATGAACCATTTGATATTCGAAG
CGGATGCCTATCGCGTGATGTATGAACTATGGGTATGCAGTTTCTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis