Browse Element(s) Details


Os.38219.1.A1_at

Description gb:AK111437.1
DB_XREF= gi:32996646
TID=Os.38219.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A03, full insert sequence.
FL= gb:AK111437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g483806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48320Os.53976.1.S1_at11/113+27466941..27470510NB-ARC domain containing protein, expressed
LOC_Os03g48330OsAffx.10596.1.S1_x_at1/113+27473796..27476878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48340OsAffx.20387.1.S1_x_at1/113+27477131..27477541retrotransposon protein, putative, unclassified
LOC_Os03g48350NANA3+27478065..27479993transposon protein, putative, unclassified
LOC_Os03g48360NANA3+27480830..27483594retrotransposon protein, putative, unclassified
LOC_Os03g48364NANA3+27484043..27484438transposon protein, putative, unclassified
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein
LOC_Os03g48380Os.38219.1.A1_at6/113+27495476..27499250expressed protein
LOC_Os03g48390Os.11496.1.S1_at6/113+27501330..27503409expressed protein
LOC_Os03g48400OsAffx.13404.1.S1_at11/113+27504978..27506238hypothetical protein
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38219.1.A1_at--623--2311Chr03:27496603..27496975 (25 bp)
AAAGGCAATCCAGCTAGCAGAGGCT
LOC_Os03g48380
Os.38219.1.A1_at--853--2291Chr03:27496548..27496572 (25 bp)
AAAGTCTTTGACATCTTGGGTCCAG
LOC_Os03g48380
Os.38219.1.A1_at--407--10851Chr03:27496533..27496557 (25 bp)
TTGGGTCCAGATTTCGATGCACTCA
LOC_Os03g48380
Os.38219.1.A1_at--75--5311Chr03:27495539..27495563 (25 bp)
GAAGGCATACTCATTGCATGGCAGA
LOC_Os03g48380
Os.38219.1.A1_at--671--5031Chr03:27495511..27495535 (25 bp)
GCAGATGCTTCAGTCGCATCCGAAA
LOC_Os03g48380
Os.38219.1.A1_at--1095--8231Chr03:27495485..27495509 (25 bp)
GGCAAATGCTCTACAGGCTGCTTAT
LOC_Os03g48380
Os.38219.1.A1_at--1063--891Chr03:27495471..27495495 (25 bp)
AGGCTGCTTATTCTCGTTAATTTCG
NONE
Os.38219.1.A1_at--1143--251Chr03:27495424..27495448 (25 bp)
ATATGCTTACATGCCCTATAGAGTG
NONE
Os.38219.1.A1_at--493--10031Chr03:27495406..27495430 (25 bp)
TAGAGTGCACATTCGCTGTTTGACA
NONE
Os.38219.1.A1_at--616--351Chr03:27495379..27495403 (25 bp)
ATAAGTGGCCGCGAACCAATTTATA
NONE
Os.38219.1.A1_at--397--10771Chr03:27495348..27495372 (25 bp)
TTGATGGGACCCTTACGAGTTACTC
NONE
Target Sequence 
AAAGGCAATCCAGCTAGCAGAGGCTGTGTATGAATATGGAAAAGGAGAGCACAAGAAAGTCTTTGACATCTTGGGTCCAG
ATTTCGATGCACTCAGTTGTAAAATGATTGGGGCATCAGATGAGCAAGTGGATGTCTTCAATGAAGTTTGGTACACTGTG
CTAATAAATACCGGAGAGAGTTCCAGAGCAATTGAGGTGCTCGAGAAACAAATTAGGAAACGAGAGGGTGCACCCTTCTT
GTGGCGCTTGCTGGAGAAGGCATACTCATTGCATGGCAGAGCTGCAGATGCTTCAGTCGCATCCGAAAAGGCAAATGCTC
TACAGGCTGCTTATTCTCGTTAATTTCGAGTTATGAAATACAGTATACCAATATGCTTACATGCCCTATAGAGTGCACAT
TCGCTGTTTGACATAATAAGTGGCCGCGAACCAATTTATATATGATTTGATGGGACCCTTACGAGTTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38219.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis