Browse Element(s) Details


Os.53976.1.S1_at

Description gb:AK101113.1
DB_XREF= gi:32986322
TID=Os.53976.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53976 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025F14, full insert sequence.
FL= gb:AK101113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4832011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48300Os.19164.1.S1_at11/113+27436334..27453097LOC495012 protein, putative, expressed
LOC_Os03g48310Os.52689.1.S1_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48310Os.52689.1.S2_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48320Os.53976.1.S1_at11/113+27466941..27470510NB-ARC domain containing protein, expressed
LOC_Os03g48330OsAffx.10596.1.S1_x_at1/113+27473796..27476878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48340OsAffx.20387.1.S1_x_at1/113+27477131..27477541retrotransposon protein, putative, unclassified
LOC_Os03g48350NANA3+27478065..27479993transposon protein, putative, unclassified
LOC_Os03g48360NANA3+27480830..27483594retrotransposon protein, putative, unclassified
LOC_Os03g48364NANA3+27484043..27484438transposon protein, putative, unclassified
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein
LOC_Os03g48380Os.38219.1.A1_at6/113+27495476..27499250expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53976.1.S1_at--1079--2691Chr03:27467454..27467478 (25 bp)
AAGCTTTGGTGCTGACGAACGCCGT
LOC_Os03g48320
Os.53976.1.S1_at--715--4491Chr03:27467434..27467458 (25 bp)
GCCGTGAGCCTTGAATCCGTAGAGA
LOC_Os03g48320
Os.53976.1.S1_at--875--5971Chr03:27467413..27467437 (25 bp)
GAGAACTTGCATTCGCTGGTTGAAC
LOC_Os03g48320
Os.53976.1.S1_at--1010--8571Chr03:27467397..27467421 (25 bp)
TGGTTGAACTTTACCTGGCTGACAA
LOC_Os03g48320
Os.53976.1.S1_at--249--6251Chr03:27467360..27467384 (25 bp)
GATGGTTGTAAACTGCTCGAGCTTG
LOC_Os03g48320
Os.53976.1.S1_at--309--2131Chr03:27467292..27467316 (25 bp)
ACAGGTTGCCTGCAGTCCGGAGCAT
LOC_Os03g48320
Os.53976.1.S1_at--240--6191Chr03:27467260..27467284 (25 bp)
GAGGACTTGGATGCTGACACGCTCC
LOC_Os03g48320
Os.53976.1.S1_at--505--8911Chr03:27467184..27467208 (25 bp)
TGAGCTTGCTCAACCTGATATCCTT
LOC_Os03g48320
Os.53976.1.S1_at--703--571Chr03:27467165..27467189 (25 bp)
ATCCTTGCAGGATGCCAGCTCTGAA
LOC_Os03g48320
Os.53976.1.S1_at--1078--5252Chr10:13540321..13540358 (24 bp)
GAATGTTACTTCCTTTATACCAAAG
NONE
Os.53976.1.S1_at--212--2451Chr03:27467026..27467050 (25 bp)
AACATCTCCAAAGCCTGAACTTCTG
LOC_Os03g48320
Target Sequence 
AAGCTTTGGTGCTGACGAACGCCGTGAGCCTTGAATCCGTAGAGAACTTGCATTCGCTGGTTGAACTTTACCTGGCTGAC
AACCCAAAGCTAGAGATGGTTGTAAACTGCTCGAGCTTGACGAAGATTGAGATCCTCAGATGCCCAGAGCTGAAGGCGTT
TGACAGGTTGCCTGCAGTCCGGAGCATCGTTTGGGAGGACTTGGATGCTGACACGCTCCCGGGGTACTTACAGGAGGCAA
AGGTAAAGAGGTTACACATAAACTGCAACTTGAGCTTGCTCAACCTGATATCCTTGCAGGATGCCAGCTCTGAAGAGTGG
AGGAGCGTCCGGCATNTGCAACAATTGAAGGTTTTCGGGTTCAAACCACAGAGCGAAACGTCTGAATGTTACTTCCTTTA
TACCAAAGAGCCATATCACGTCGAAACAAACATCTCCAAAGCCTGAACTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis