Browse Element(s) Details


Os.52689.1.S1_at

Description gb:AK100996.1
DB_XREF= gi:32986205
TID=Os.52689.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52689 (NCBI UniGene Cluster)
UG_TITLE=OSA1 mRNA for H-ATPase, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023146K22, full insert sequence.
FL= gb:D10207.1 gb:AK100996.1 gb:AK068765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4831011/11Plasma membrane ATPase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48300Os.19164.1.S1_at11/113+27436334..27453097LOC495012 protein, putative, expressed
LOC_Os03g48310Os.52689.1.S1_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48310Os.52689.1.S2_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48320Os.53976.1.S1_at11/113+27466941..27470510NB-ARC domain containing protein, expressed
LOC_Os03g48330OsAffx.10596.1.S1_x_at1/113+27473796..27476878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48340OsAffx.20387.1.S1_x_at1/113+27477131..27477541retrotransposon protein, putative, unclassified
LOC_Os03g48350NANA3+27478065..27479993transposon protein, putative, unclassified
LOC_Os03g48360NANA3+27480830..27483594retrotransposon protein, putative, unclassified
LOC_Os03g48364NANA3+27484043..27484438transposon protein, putative, unclassified
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52689.1.S1_at--982--10451Chr03:27462525..27462549 (25 bp)
TTCAATCCGACTGACAAGAGAACTG
LOC_Os03g48310
Os.52689.1.S1_at--298--1271Chr03:27462577..27462601 (25 bp)
AGATGTACCGTGTTAGTAAAGGCGC
LOC_Os03g48310
Os.52689.1.S1_at--144--1371Chr03:27462707..27462728 (22 bp)
AGAGCAGATTCTCAACCTGGCACAC
LOC_Os03g48310
Os.52689.1.S1_at--659--5451Chr03:27462744..27462768 (25 bp)
GAACGACGAGTCCATGCTGTAATTG
LOC_Os03g48310
Os.52689.1.S1_at--900--8651Chr03:27463006..27463030 (25 bp)
TGGGCCATGGCGCTTTGTTGCTCTC
LOC_Os03g48310
Os.52689.1.S1_at--98--3411Chr03:27463065..27463089 (25 bp)
CAGAAACAATTCGAAGGGCACTTAA
LOC_Os03g48310
Os.52689.1.S1_at--678--6451Chr03:27463790..27463884 (25 bp)
GATCACAGGTGACCAACTAGCGATT
LOC_Os03g48310
Os.52689.1.S1_at--992--991Chr03:27463958..27463982 (25 bp)
AGGATGAGTCTGTTGCTGCTTTACC
LOC_Os03g48310
Os.52689.1.S1_at--341--4731Chr03:27463972..27463996 (25 bp)
GCTGCTTTACCAGTTGACGATCTAA
LOC_Os03g48310
Os.52689.1.S1_at--979--6591Chr03:27464133..27464157 (25 bp)
GATTGTAAAACGTCTGCAAGCACGG
LOC_Os03g48310
Os.52689.1.S1_at--380--5171Chr03:27464148..27464172 (25 bp)
GCAAGCACGGAAGCACATCTGTGGA
LOC_Os03g48310
Target Sequence 
TTCAATCCGACTGACAAGAGAACTGCATTGACATACATTGATAGTGATGGAAAGATGTACCGTGTTAGTAAAGGCGCNCC
AGAGCAGATTCTCAACCTGGCACACAACAAGACACAGATAGAACGACGAGTCCATGCTGTAATTGATAAGTTTTGCAGAA
CGTGGACTTCGNTCACTTGCTGTAGCATATCAGGAAGTTCCAGATGGAAGGAAAGAGAGTCCTGGTGGGCCATGGCGCTT
TGTTGCTCTCCTTCCACTCTTTGATCCTCCAAGGCATGATAGTGCAGAAACAATTCGAAGGGCACTTAACCTTGGTGTAA
ATGTTAAGATGATCACAGGTGACCAACTAGCGATTGGGAAAGAAACAGGGCGTCGTCTAGGAATGGGTACNAACATGTAC
CCTTCATCTGCTTTGTTGGGACAGAACAAGGATGAGTCTGTTGCTGCTTTACCAGTTGACGATCTAATCGAGAAAGCTGA
TGGTTTTGCTGGTGTATTCCCAGAGCACAAGTATGAGATTGTAAAACGTCTGCAAGCACGGAAGCACATCTGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis