Browse Element(s) Details


OsAffx.3551.1.S1_at

Description tigr:9631.m04708
TID=OsAffx.3551.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4837011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48310Os.52689.1.S1_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48310Os.52689.1.S2_at11/113+27459337..27466472Plasma membrane ATPase 3, putative, expressed
LOC_Os03g48320Os.53976.1.S1_at11/113+27466941..27470510NB-ARC domain containing protein, expressed
LOC_Os03g48330OsAffx.10596.1.S1_x_at1/113+27473796..27476878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g48340OsAffx.20387.1.S1_x_at1/113+27477131..27477541retrotransposon protein, putative, unclassified
LOC_Os03g48350NANA3+27478065..27479993transposon protein, putative, unclassified
LOC_Os03g48360NANA3+27480830..27483594retrotransposon protein, putative, unclassified
LOC_Os03g48364NANA3+27484043..27484438transposon protein, putative, unclassified
LOC_Os03g48370OsAffx.3551.1.S1_at11/113+27485907..27492254NB-ARC domain containing protein
LOC_Os03g48380Os.38219.1.A1_at6/113+27495476..27499250expressed protein
LOC_Os03g48390Os.11496.1.S1_at6/113+27501330..27503409expressed protein
LOC_Os03g48400OsAffx.13404.1.S1_at11/113+27504978..27506238hypothetical protein
LOC_Os03g48410OsAffx.13405.1.S1_at9/113+27516878..27517788hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3551.1.S1_at--833--51Chr03:27491496..27491520 (25 bp)
ATTGATCATGCTCCATCCATCGTGA
LOC_Os03g48370
OsAffx.3551.1.S1_at--531--9251Chr03:27491547..27491571 (25 bp)
TCCTCCTCTAGTGCTGATGACCAGA
LOC_Os03g48370
OsAffx.3551.1.S1_at--874--1591Chr03:27491608..27491628 (21 bp)
AGCTCCATGGTCTTTCTCGCGAGAA
LOC_Os03g48370
OsAffx.3551.1.S1_at--426--5971Chr03:27491850..27491874 (25 bp)
GAGAACTTCCCGTCACTTGTGGAGC
LOC_Os03g48370
OsAffx.3551.1.S1_at--1040--10831Chr03:27491866..27491890 (25 bp)
TTGTGGAGCTCACGTCAGCTGACAA
LOC_Os03g48370
OsAffx.3551.1.S1_at--10--5051Chr03:27491900..27491924 (25 bp)
GCAGAGGATCTCCAACAGTCCAAGA
LOC_Os03g48370
OsAffx.3551.1.S1_at--221--511Chr03:27491934..27491958 (25 bp)
ATCGTCGTTATCAGATGCCCAGGGC
LOC_Os03g48370
OsAffx.3551.1.S1_at--1067--10731Chr03:27491976..27492000 (25 bp)
TTGCAATCACTTAGGAGCGTCATTT
LOC_Os03g48370
OsAffx.3551.1.S1_at--304--2691Chr03:27492057..27492081 (25 bp)
AAGCTGGACGTGTACTGCAGTCTAA
LOC_Os03g48370
OsAffx.3551.1.S1_at--86--5111Chr03:27492137..27492161 (25 bp)
GCACGTCCAGCTACTGAAGGCATAT
LOC_Os03g48370
OsAffx.3551.1.S1_at--4--2911Chr03:27492183..27492207 (25 bp)
AAGGTTGACCGGCACATCTTCTACA
LOC_Os03g48370
Target Sequence 
ATTGATCATGCTCCATCCATCGTGAGCATTGGCCATGATCTCCTCTTCCTCTCCTCCTCTAGTGCTGATGACCAGAAAGT
CACAACTGGAACAAGGATCACTAGGAAGCTGCAGCTCCATGGTCTTTCTCGCGAGAACTTCCCGTCACTTGTGGAGCTCA
CGTCAGCTGACAACCCGAAGCTGCAGAGGATCTCCAACAGTCCAAGACTGCGACATATCGTCGTTATCAGATGCCCAGGG
CTGAAGGTAGTGAAGGATTTGCAATCACTTAGGAGCGTCATTTGGAAGGATTTGGATGCTGATGCCCTCCCAGAGTACCT
ACGAGAGACAGAGCTAAATAAGCTGGACGTGTACTGCAGTCTAAGATTGCTTAAACTCATATCCTTGCAAGATGGCAGCT
ATGAGTGGGAAAAGATCCAGCACGTCCAGCTACTGAAGGCATATGGGAAGAGATCAACGGAGGATAAGGTTGACCGGCAC
ATCTTCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis