Browse Element(s) Details


Os.11547.1.S1_s_at

Description gb:AK064918.1
DB_XREF= gi:32974936
TID=Os.11547.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000M23, full insert sequence.
FL= gb:AK104754.1 gb:AK064918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4803011/11Peroxidase 16 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11547.1.S1_s_at--304--1291Chr06:29052824..29052848 (25 bp)
AGATCCGGCGAGTCTGCACCAAGGT
LOC_Os06g48030
Os.11547.1.S1_s_at--361--4551Chr06:29052839..29052863 (25 bp)
GCACCAAGGTCAACTAATAACGTAG
LOC_Os06g48030
Os.11547.1.S1_s_at--667--5031Chr06:29052865..29052889 (25 bp)
GCAGTATAGCTCACATTTGGGTGGT
LOC_Os06g48030
Os.11547.1.S1_s_at--523--7351Chr06:29052905..29052929 (25 bp)
GTGAATTCTTCTCTGTGTCTCTCTT
LOC_Os06g48030
Os.11547.1.S1_s_at--194--10571Chr06:29052943..29052967 (25 bp)
TTCTTCTCCATGATGATCTTCGATT
LOC_Os06g48030
Os.11547.1.S1_s_at--954--431Chr06:29052958..29052982 (25 bp)
ATCTTCGATTCTCACTGTCCATGTT
LOC_Os06g48030
Os.11547.1.S1_s_at--1019--2851Chr06:29052986..29053010 (25 bp)
AAGTCCACCGCGCACAGTTGTTGTA
LOC_Os06g48030
Os.11547.1.S1_s_at--747--1231Chr06:29053001..29053025 (25 bp)
AGTTGTTGTATTTGTTCCCGCCAAT
LOC_Os06g48030
Os.11547.1.S1_s_at--896--4171Chr06:29053019..29053043 (25 bp)
CGCCAATTCTTTTCTTGATTCTTAT
LOC_Os06g48030
Os.11547.1.S1_s_at--215--10091Chr06:29053070..29053094 (25 bp)
TAGGATATATTTTCAGGGCCCCTAC
LOC_Os06g48030
Os.11547.1.S1_s_at--741--8411Chr06:29053086..29053110 (25 bp)
GGCCCCTACCCATGTGATATGATAG
LOC_Os06g48030
Target Sequence 
AGATCCGGCGAGTCTGCACCAAGGTCAACTAATAACGTAGAGCAGTATAGCTCACATTTGGGTGGTAGAGAGGGTAAATT
GGTGAATTCTTCTCTGTGTCTCTCTTCTTCTTCTTCCTCTTCTTCTCCATGATGATCTTCGATTCTCACTGTCCATGTTC
ACAAGTCCACCGCGCACAGTTGTTGTATTTGTTCCCGCCAATTCTTTTCTTGATTCTTATAATCATAAAAAGTGTCATAC
ATTAATTAGGATATATTTTCAGGGCCCCTACCCATGTGATATGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11547.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis