Browse Element(s) Details


Os.9637.1.S1_at

Description gb:AK100512.1
DB_XREF= gi:32985721
TID=Os.9637.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9637 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099O06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099O06, full insert sequence.
FL= gb:AK100512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4805011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed
LOC_Os06g48070OsAffx.18275.1.S1_x_at1/116+29085085..29088671retrotransposon protein, putative, unclassified
LOC_Os06g48080NANA6+29092084..29093768retrotransposon protein, putative, unclassified
LOC_Os06g48090OsAffx.22492.1.S1_x_at1/116+29094905..29101043retrotransposon protein, putative, unclassified
LOC_Os06g48090OsAffx.22492.1.S1_at1/116+29094905..29101043retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0003676molecular_functionnucleic acid binding
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9637.1.S1_at--843--971Chr06:29070268..29070292 (25 bp)
AGGAGACCAAGAGGACGCTGATGAT
LOC_Os06g48050
Os.9637.1.S1_at--226--3391Chr06:29070353..29070377 (25 bp)
CAGCCCGGGAAAATCGAGCTGATTT
LOC_Os06g48050
Os.9637.1.S1_at--581--2351Chr06:29070412..29070436 (25 bp)
AAAGCTTCAGCGGTGATGCACGTAT
LOC_Os06g48050
Os.9637.1.S1_at--234--3171Chr06:29070448..29070472 (25 bp)
AATTGAACTGCGAGGTGTGCTTTGT
LOC_Os06g48050
Os.9637.1.S1_at--177--3691Chr06:29070467..29070491 (25 bp)
CTTTGTGGTGTGATGTTTCGGTTTC
LOC_Os06g48050
Os.9637.1.S1_at--974--731Chr06:29070479..29070503 (25 bp)
ATGTTTCGGTTTCTTGTTCTCTTTG
LOC_Os06g48050
Os.9637.1.S1_at--832--6391Chr06:29070511..29070535 (25 bp)
GATCGTTGATTGATTCTTCTGATAA
LOC_Os06g48050
Os.9637.1.S1_at--746--6431Chr06:29070578..29070602 (25 bp)
GATCATTCGATCTAGTGTTGTTTAC
LOC_Os06g48050
Os.9637.1.S1_at--443--8671Chr06:29070665..29070689 (25 bp)
TGTGGTTGTCAACTTGTGCTACATT
LOC_Os06g48050
Os.9637.1.S1_at--94--7331Chr06:29070680..29070704 (25 bp)
GTGCTACATTGCTGAGTTTTGAGAT
LOC_Os06g48050
Os.9637.1.S1_at--22--5671Chr06:29070729..29070753 (25 bp)
GACATGCAATCCATTTTGTACGTTT
LOC_Os06g48050
Target Sequence 
AGGAGACCAAGAGGACGCTGATGATGAAGAGGAAGAGCAAGGTGAAGGCGCTGGTTGGGGCGTTCGAGACGGTCATGGAC
ACCCCCAGCCCGGGAAAATCGAGCTGATTTTGATTTGGATTTTTTTTTCTTCTTTTTTTTTGGAGGGAAAGCTTCAGCGG
TGATGCACGTATTGAGTGGTTTGAATTGAACTGCGAGGTGTGCTTTGTGGTGTGATGTTTCGGTTTCTTGTTCTCTTTGT
TGCATTGATCGTTGATTGATTCTTCTGATAACTGAAACAAATGGAAATGTTATTGTCGATTTGTTTGTTTGTTGATCATT
CGATCTAGTGTTGTTTACTAGGCTTAGTTGTATGTAACTAAAAAGGGAAATAGCTGTGTGTTCTTGAGAGCTGAGACTGG
TGTGGTTGTCAACTTGTGCTACATTGCTGAGTTTTGAGATTTATGCTTGTAAACAATTATTGATGACATGCAATCCATTT
TGTACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9637.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis