Browse Element(s) Details


OsAffx.15978.1.S1_x_at

Description tigr:9634.m04682
TID=OsAffx.15978.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4800011/11Peroxidase 16 precursor, putative
LOC_Os06g4801011/11Peroxidase 16 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47950OsAffx.15977.1.S1_s_at11/116+28994482..28996359pentatricopeptide, putative, expressed
LOC_Os06g47960OsAffx.28163.1.S1_at11/116+28997830..28998483RNase H domain-containing protein, putative
LOC_Os06g47970Os.11917.1.S1_at11/116+29001191..29002543expressed protein
LOC_Os06g47980OsAffx.5142.1.S1_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47980OsAffx.5142.1.S1_x_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47990Os.35344.18.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990Os.35344.3.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990OsAffx.22940.5.S1_x_at3/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g48000OsAffx.15978.1.S1_x_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48000OsAffx.15978.1.S1_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15978.1.S1_x_at--854--5492Chr06:29021106..29021130 (25 bp)
GAACAGGGTGTCCTGCGCCGACATC
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--26--9452Chr06:29021642..29021666 (25 bp)
TCGGCAGGTTCGACGGCAGGGTGTC
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--626--7712Chr06:29021660..29021684 (25 bp)
GGGTGTCGACCAGGAACAGCGTCAA
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--1049--2472Chr06:29021674..29021698 (25 bp)
AACAGCGTCAACCTGCCTCATGGCA
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--1040--9712Chr06:29021681..29021705 (25 bp)
TCAACCTGCCTCATGGCAACTTCAA
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--802--3652Chr06:29021899..29021923 (25 bp)
CTTCTTCGGCTACAGGCTCGGCGGC
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--838--3492Chr06:29021932..29021956 (25 bp)
CATGGACCCCAACTTCGCGGCGATG
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--944--2512Chr06:29021942..29021966 (25 bp)
AACTTCGCGGCGATGCTGCGCGGCA
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--144--1612Chr06:29021966..29021990 (25 bp)
AGCTGCGGCTCCAGCGGCTTCGCGT
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--184--6712Chr06:29022016..29022040 (25 bp)
GTTCGACAACGCCTTCTACCAGAAC
LOC_Os06g48000
OsAffx.15978.1.S1_x_at--388--1072Chr06:29022132..29022156 (25 bp)
AGGGCGCCTTCTTCAACGACTTCGT
LOC_Os06g48000
Target Sequence 
GAACAGGGTGTCCTGCGCCGACATCTTGGCCCTCGCCACNAGAGACTCCNTCTTCCTGAGTGGAGGNCCGNACTACGCGG
TGGAGCTCGGCAGGTTCGACGGCAGGGTGTCGACCAGGAACAGCGTCAACCTGCCTCATGGCAACTTCAACCTCGACCAG
CTCACCGGCTACTTCGGCAGCCTCGGCCTCAGCCCCACCGACATGGTCGCCCTCTCCGGGGGTCACACCATCGGGGCGGC
GTCNTGCANCTTCTTCGGCTACAGGCTCGGCGGCGACCCGACCATGGACCCCAACTTCGCGGCGATGCTGCGCGGCAGCT
GCGGCTCCAGCGGCTTCGCGTTCCTCGACGCCGCGACGCCGCTCCGGTTCGACAACGCCTTCTACCAGAACCTCCGCGCC
GGCCGCGGCCTCCTCGGCTCCGACCAGACGCTCTACTCCGACCCGAGGTCCCGCGGCCTCGTCGACCGCTACGCCGCCAA
CCAGGGCGCCTTCTTCAACGACTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15978.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis