Browse Element(s) Details

OsAffx.15977.1.S1_s_at

Description

tigr:9634.m04677
TID=OsAffx.15977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47950	11/11	pentatricopeptide, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed
LOC_Os06g47950	OsAffx.15977.1.S1_s_at	11/11	6	+	28994482..28996359	pentatricopeptide, putative, expressed
LOC_Os06g47960	OsAffx.28163.1.S1_at	11/11	6	+	28997830..28998483	RNase H domain-containing protein, putative
LOC_Os06g47970	Os.11917.1.S1_at	11/11	6	+	29001191..29002543	expressed protein
LOC_Os06g47980	OsAffx.5142.1.S1_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47980	OsAffx.5142.1.S1_x_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47990	Os.35344.18.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	Os.35344.3.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	OsAffx.22940.5.S1_x_at	3/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g48000	OsAffx.15978.1.S1_x_at	11/11	6	+	29020795..29022244	Peroxidase 16 precursor, putative
LOC_Os06g48000	OsAffx.15978.1.S1_at	11/11	6	+	29020795..29022244	Peroxidase 16 precursor, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15977.1.S1_s_at--107--895	1	Chr06:28995020..28995044 (25 bp)	TGACTCCTACAGAACGAGCTTTTAG	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--878--823	1	Chr06:28994939..28994963 (25 bp)	GGCAAATGATGAAGGCAGCCCAATT	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--976--319	1	Chr06:28994904..28994928 (25 bp)	CAATGTGATGAAGAGGCTGCCTGAA	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--956--477	1	Chr06:28994889..28994913 (25 bp)	GCTGCCTGAAGCCATGATTGGTTAT	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--330--495	1	Chr06:28994822..28994846 (25 bp)	GCATAAAAACCGCAAGCCTCAATTT	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--75--899	1	Chr06:28994770..28994794 (25 bp)	TGAACTGTGATGTCAAGGCCTTTAA	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--373--519	1	Chr06:28994732..28994756 (25 bp)	GCAATGACTAAACTCGTATCAGCAA	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--190--97	1	Chr06:28994690..28994714 (25 bp)	AGGAGTTGGCCTGTGGTCAATTTGA	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--185--1013	1	Chr06:28994637..28994661 (25 bp)	TATGAAGAGCTTTGGTACTACCCTA	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--1073--131	1	Chr06:28994581..28994605 (25 bp)	AGAGGCTGATGTTTCTAGTTTTATC	LOC_Os06g47950
OsAffx.15977.1.S1_s_at--1092--1015	1	Chr06:28994560..28994584 (25 bp)	TATCAGAACATTTGCCCTTGCCAAG	LOC_Os06g47950

Target Sequence

TGACTCCTACAGAACGAGCTTTTAGGGTTTTGGAAGGGTTTTTGAAGCGGAAGCGGGAATTCGAAAAGCTTGAGGAGATT
AGGCAAATGATGAAGGCAGCCCAATTGGATGAACATCAATGTGATGAAGAGGCTGCCTGAAGCCATGATTGGTTATTTTT
AAGGAAACATTTTTAATTGTTTCCTGTGAAATTTGATTGCATAAAAACCGCAAGCCTCAATTTCTTAATAAGGCCAATAC
AATTGTTTGATGAACTGTGATGTCAAGGCCTTTAAAGGGTGAAATATTGCAATGACTAAACTCGTATCAGCAAGGAAAAC
AATGGGGATAAGGAGTTGGCCTGTGGTCAATTTGAGAAGCATAGATATGGCTAACCTTGAAATTATGAAGAGCTTTGGTA
CTACCCTAATAGGAATTTTGTGGTGCCAGGTTCCACTGAAGAGGCTGATGTTTCTAGTTTTATCAGAACATTTGCCCTTG
CCAAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis