Browse Element(s) Details

Os.50234.1.S1_at

Description

gb:AK120261.1
DB_XREF= gi:37989884
TID=Os.50234.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046J02, full insert sequence.
FL= gb:AK120261.1 gb:AK065599.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47930	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47860	Os.32500.1.S1_a_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.32500.2.A1_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.56541.1.S1_at	1/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47870	NA	NA	6	+	28965760..28966626	hypothetical protein
LOC_Os06g47880	OsAffx.5141.1.S1_at	11/11	6	+	28966976..28968112	Protein kinase domain containing protein
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed
LOC_Os06g47950	OsAffx.15977.1.S1_s_at	11/11	6	+	28994482..28996359	pentatricopeptide, putative, expressed
LOC_Os06g47960	OsAffx.28163.1.S1_at	11/11	6	+	28997830..28998483	RNase H domain-containing protein, putative
LOC_Os06g47970	Os.11917.1.S1_at	11/11	6	+	29001191..29002543	expressed protein
LOC_Os06g47980	OsAffx.5142.1.S1_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47980	OsAffx.5142.1.S1_x_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47990	Os.35344.18.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	Os.35344.3.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	OsAffx.22940.5.S1_x_at	3/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50234.1.S1_at--1158--583	1	Chr06:28987653..28987677 (25 bp)	GACCTCAAACTAACAATTGGCCCCA	LOC_Os06g47930
Os.50234.1.S1_at--889--1	1	Chr06:28987638..28987662 (25 bp)	ATTGGCCCCAGTTTGCATGCAACAA	LOC_Os06g47930
Os.50234.1.S1_at--289--217	1	Chr06:28987606..28987630 (25 bp)	ACACTGGCTCTTCTCAGGAAGCAGG	LOC_Os06g47930
Os.50234.1.S1_at--259--559	1	Chr06:28987577..28987601 (25 bp)	GAAATCCTTCTGGTCAGCATCGATG	LOC_Os06g47930
Os.50234.1.S1_at--834--817	1	Chr06:28987503..28987527 (25 bp)	GGAAGCAGAAGCCTCCTAGTCCTAG	LOC_Os06g47930
Os.50234.1.S1_at--1138--711	1	Chr06:28987331..28987355 (25 bp)	GTCATGATGAGCTTTACCAACGATT	LOC_Os06g47930
Os.50234.1.S1_at--704--325	1	Chr06:28987314..28987338 (25 bp)	CAACGATTTGGCTCTTGTTTGTCCT	LOC_Os06g47930
Os.50234.1.S1_at--14--687	1	Chr06:28987298..28987322 (25 bp)	GTTTGTCCTCTCTTCAATTCAGACA	LOC_Os06g47930
Os.50234.1.S1_at--594--309	1	Chr06:28987225..28987249 (25 bp)	AATAGTTCCTGACTTCAGTCTTCCT	LOC_Os06g47930
Os.50234.1.S1_at--352--25	1	Chr06:28987188..28987212 (25 bp)	ATATCAGTCGTCATATCGGTCTTCC	LOC_Os06g47930
Os.50234.1.S1_at--629--19	1	Chr06:28987140..28987164 (25 bp)	ATTTCTTTGTCTGCATATCCATGTA	LOC_Os06g47930

Target Sequence

GACCTCAAACTAACAATTGGCCCCAGTTTGCATGCAACAAAAGCACCACACTGGCTCTTCTCAGGAAGCAGGGAAAGAAA
TCCTTCTGGTCAGCATCGATGACAAAAAGCTGGCATTGTAGAACAGTTAGTTGGATGACAAAAAAAGAGAGGAAGCAGAA
GCCTCCTAGTCCTAGCAATGGAAGGCAACACTTCCAAGATATATCATCAATGCAACCTAGCCTCCAAATTTTGATCAGAG
TTAAGCCTCGATCATGAGTGATCTGTGTGCAAACCATAGAGTGTAGCAGAACTAGGATTTGCTAGGAGCACATTATTGTA
ATGTCATGATGAGCTTTACCAACGATTTGGCTCTTGTTTGTCCTCTCTTCAATTCAGACAGGAAGAGAACAAACATTACT
GAGGAAGTATCAAATTTGAAAAGAGCAAAATAGTTCCTGACTTCAGTCTTCCTGATGCAGTTGTTATATCAGTCGTCATA
TCGGTCTTCCATGATTGGTTATTTCTTATTTACATTTCTTTGTCTGCATATCCATGTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis