Browse Element(s) Details

Os.32506.1.S1_at

Description

gb:AK067484.1
DB_XREF= gi:32977502
TID=Os.32506.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32506 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013108G13, full insert sequence.
FL= gb:AK067484.1 gb:AK103983.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47940	11/11	nitrogen fixation protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47880	OsAffx.5141.1.S1_at	11/11	6	+	28966976..28968112	Protein kinase domain containing protein
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed
LOC_Os06g47950	OsAffx.15977.1.S1_s_at	11/11	6	+	28994482..28996359	pentatricopeptide, putative, expressed
LOC_Os06g47960	OsAffx.28163.1.S1_at	11/11	6	+	28997830..28998483	RNase H domain-containing protein, putative
LOC_Os06g47970	Os.11917.1.S1_at	11/11	6	+	29001191..29002543	expressed protein
LOC_Os06g47980	OsAffx.5142.1.S1_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47980	OsAffx.5142.1.S1_x_at	11/11	6	+	29010063..29010587	hypothetical protein
LOC_Os06g47990	Os.35344.18.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	Os.35344.3.S1_x_at	9/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR
LOC_Os06g47990	OsAffx.22940.5.S1_x_at	3/11	6	+	29012149..29018046	Transposable element protein, putative, MuDR

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Gene Ontology Classification

GO id	Type	Name
GO:0009658	biological_process	chloroplast organization and biogenesis
GO:0016226	biological_process	iron-sulfur cluster assembly
GO:0009507	cellular_component	chloroplast
GO:0005198	molecular_function	structural molecule activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.32506.1.S1_at--1106--321	1	Chr06:28993414..28993438 (25 bp)	CAAGATGGGCATCGAGACGCGCCTC	LOC_Os06g47940
Os.32506.1.S1_at--61--631	1	Chr06:28993679..28993703 (25 bp)	GATGAGATCAGACCATACCTTTCCG	LOC_Os06g47940
Os.32506.1.S1_at--1104--751	1	Chr06:28993713..28993737 (25 bp)	GTGGAAGCCTTGATCTTGTTCAGAT	LOC_Os06g47940
Os.32506.1.S1_at--735--1053	1	Chr06:28993731..28993755 (25 bp)	TTCAGATTGATGAATCCGTCGTCAA	LOC_Os06g47940
Os.32506.1.S1_at--75--927	1	Chr06:28993745..28993769 (25 bp)	TCCGTCGTCAAAGTTCGGTTAACTG	LOC_Os06g47940
Os.32506.1.S1_at--741--979	1	Chr06:28993764..28993788 (25 bp)	TAACTGGACCTGCAGCGGGTGTAAT	LOC_Os06g47940
Os.32506.1.S1_at--934--57	1	Chr06:28993834..28993858 (25 bp)	ATCCATCCTGGCTGTTCAGTTGACA	LOC_Os06g47940
Os.32506.1.S1_at--950--249	1	Chr06:28993866..28993890 (25 bp)	AACATGAGTTCAGTTATGCAGCAAC	LOC_Os06g47940
Os.32506.1.S1_at--449--655	1	Chr06:28993921..28993945 (25 bp)	GATTTTGTGGTATTCAGTCTCAGTC	LOC_Os06g47940
Os.32506.1.S1_at--722--715	1	Chr06:28993937..28993961 (25 bp)	GTCTCAGTCTTGTGGTTTTGAATCA	LOC_Os06g47940
Os.32506.1.S1_at--48--259	1	Chr06:28993976..28994000 (25 bp)	AACGTCTGAACCTATCATACCATCT	LOC_Os06g47940

Target Sequence

CAAGATGGGCATCGAGACGCGCCTCCGCGACAAGATCCCCGAGATCCTCGCCGTCGAGCAGATCGTCGACACCGAGACCG
GCCTCGAGCTCAACCACGACAACGTCGACAAGGTGCTGGATGAGATCAGACCATACCTTTCCGGCACCGGAGGTGGAAGC
CTTGATCTTGTTCAGATTGATGAATCCGTCGTCAAAGTTCGGTTAACTGGACCTGCAGCGGGTGTAATGACAGTACGTGT
AGCTGTAACACAAAAACTGAGGGAAANGATACCATCCATCCTGGCTGTTCAGTTGACAGAGTAGAAACATGAGTTCAGTT
ATGCAGCAACTCAAGAGAAAACAAAACTTTGATTTTCAGTGATTTTGTGGTATTCAGTCTCAGTCTTGTGGTTTTGAATC
AAAACTGAAGTACTGAACGTCTGAACCTATCATACCATCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis