Browse Element(s) Details


Os.49737.1.S1_at

Description gb:AK073594.1
DB_XREF= gi:32983617
TID=Os.49737.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051C12, full insert sequence.
FL= gb:AK073594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4790011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47834Os.23984.1.S1_at11/116+28949826..28952456expressed protein
LOC_Os06g47840Os.8941.1.S1_at11/116+28953622..28956841Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850OsAffx.28161.1.S1_at11/116+28958316..28959150expressed protein
LOC_Os06g47860Os.32500.1.S1_a_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.32500.2.A1_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.56541.1.S1_at1/116+28961590..28964942expressed protein
LOC_Os06g47870NANA6+28965760..28966626hypothetical protein
LOC_Os06g47880OsAffx.5141.1.S1_at11/116+28966976..28968112Protein kinase domain containing protein
LOC_Os06g47890OsAffx.15976.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890Os.4661.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890OsAffx.15976.1.S1_x_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47900Os.49737.1.S1_at11/116+28976494..28979782expressed protein
LOC_Os06g47900Os.51829.1.S1_x_at11/116+28976494..28979782expressed protein
LOC_Os06g47910Os.54869.1.S1_at11/116+28980369..28982438GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920OsAffx.28162.1.S1_at11/116+28984905..28986851pentatricopeptide, putative
LOC_Os06g47930Os.50234.1.S1_at11/116+28987079..28989337expressed protein
LOC_Os06g47940Os.32506.1.S1_at11/116+28992798..28994024nitrogen fixation protein, putative, expressed
LOC_Os06g47950OsAffx.15977.1.S1_s_at11/116+28994482..28996359pentatricopeptide, putative, expressed
LOC_Os06g47960OsAffx.28163.1.S1_at11/116+28997830..28998483RNase H domain-containing protein, putative
LOC_Os06g47970Os.11917.1.S1_at11/116+29001191..29002543expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.49737.1.S1_at--1047--3451Chr06:28978680..28978704 (25 bp)
CAGTGATACATTCTTTTCCTTCCTT
LOC_Os06g47900
Os.49737.1.S1_at--1070--111Chr06:28978698..28978722 (25 bp)
CTTCCTTTTTCTGTAAGATAACCAT
LOC_Os06g47900
Os.49737.1.S1_at--244--2811Chr06:28978712..28978736 (25 bp)
AAGATAACCATACCGATCAAGCTTA
LOC_Os06g47900
Os.49737.1.S1_at--828--1751Chr06:28978723..28978747 (25 bp)
ACCGATCAAGCTTATTTATGTGTTA
LOC_Os06g47900
Os.49737.1.S1_at--539--771Chr06:28978740..28978764 (25 bp)
ATGTGTTAACCATTTGCAGGTCTTA
LOC_Os06g47900
Os.49737.1.S1_at--889--1731Chr06:28978748..28978772 (25 bp)
ACCATTTGCAGGTCTTAGAGCGAAT
LOC_Os06g47900
Os.49737.1.S1_at--743--1211Chr06:28978846..28978870 (25 bp)
AGTTACTTCTTTTAATGCCCTCTTG
LOC_Os06g47900
Os.49737.1.S1_at--904--10331Chr06:28978856..28978880 (25 bp)
TTTAATGCCCTCTTGCTCTGCTTGT
LOC_Os06g47900
Os.49737.1.S1_at--180--4811Chr06:28978870..28978894 (25 bp)
GCTCTGCTTGTTATAATATGATGAT
LOC_Os06g47900
Os.49737.1.S1_at--27--7391Chr06:28978923..28978947 (25 bp)
GTGAGTTGCAACTCATGCTGTGCAT
LOC_Os06g47900
Os.49737.1.S1_at--636--4731Chr06:28978939..28978963 (25 bp)
GCTGTGCATATTTAGGCTGGTGGAT
LOC_Os06g47900
Target Sequence
CAGTGATACATTCTTTTCCTTCCTTTTTCTGTAAGATAACCATACCGATCAAGCTTATTTATGTGTTAACCATTTGCAGG
TCTTAGAGCGAATCCATGAAGTTATTAAGCTCACATGGATCAGGAAATCACCTTATACTTCAAGGTATTAGGAAATATGA
GTTATGAGTTACTTCTTTTAATGCCCTCTTGCTCTGCTTGTTATAATATGATGATCAAAAGCTTATGTTATTAGCTAATG
AAGGTGAGTTGCAACTCATGCTGTGCATATTTAGGCTGGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis