Browse Element(s) Details

Os.8941.1.S1_at

Description

gb:AK103176.1
DB_XREF= gi:32988385
TID=Os.8941.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121H12, full insert sequence.
FL= gb:AK103176.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47840	11/11	Zinc finger, C2H2 type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47800	Os.17058.1.S1_at	11/11	6	+	28925199..28929068	NB-ARC domain containing protein, expressed
LOC_Os06g47810	NA	NA	6	+	28934218..28938459	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47820	Os.50958.1.S1_at	11/11	6	+	28940273..28942705	Protein kinase domain containing protein, expressed
LOC_Os06g47820	Os.50958.2.S1_at	11/11	6	+	28940273..28942705	Protein kinase domain containing protein, expressed
LOC_Os06g47830	Os.7613.1.S1_at	11/11	6	+	28945949..28949603	OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834	Os.23984.1.S1_at	11/11	6	+	28949826..28952456	expressed protein
LOC_Os06g47840	Os.8941.1.S1_at	11/11	6	+	28953622..28956841	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850	OsAffx.28161.1.S1_at	11/11	6	+	28958316..28959150	expressed protein
LOC_Os06g47860	Os.32500.1.S1_a_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.32500.2.A1_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.56541.1.S1_at	1/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47870	NA	NA	6	+	28965760..28966626	hypothetical protein
LOC_Os06g47880	OsAffx.5141.1.S1_at	11/11	6	+	28966976..28968112	Protein kinase domain containing protein
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0045449	biological_process	regulation of transcription
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8941.1.S1_at--498--93	1	Chr06:28956214..28956238 (25 bp)	AGGAACTCGTGTCAGAACTCTTGGT	LOC_Os06g47840
Os.8941.1.S1_at--371--547	1	Chr06:28956228..28956252 (25 bp)	GAACTCTTGGTTCTCGGGAATTTAT	LOC_Os06g47840
Os.8941.1.S1_at--1007--521	1	Chr06:28956245..28956269 (25 bp)	GAATTTATTCGCTACTATCGCCAGA	LOC_Os06g47840
Os.8941.1.S1_at--396--667	1	Chr06:28956284..28956308 (25 bp)	GTTGCAACAGATCGTGCTCTTGCGC	LOC_Os06g47840
Os.8941.1.S1_at--695--977	1	Chr06:28956489..28956513 (25 bp)	TAAGGCTGAAAGTTCTCCGCGCAAT	LOC_Os06g47840
Os.8941.1.S1_at--290--899	1	Chr06:28956555..28956579 (25 bp)	TGAAGAGCAACGTGATCCGCAATCT	LOC_Os06g47840
Os.8941.1.S1_at--1079--253	1	Chr06:28956587..28956611 (25 bp)	AACTGCCCATATTAGTCGATGCCAC	LOC_Os06g47840
Os.8941.1.S1_at--834--99	1	Chr06:28956619..28956643 (25 bp)	AGGATCAAAGCCCTTGGAGCTCCAG	LOC_Os06g47840
Os.8941.1.S1_at--1110--159	1	Chr06:28956636..28956660 (25 bp)	AGCTCCAGCATCATCTTTGTGGCAA	LOC_Os06g47840
Os.8941.1.S1_at--426--1041	1	Chr06:28956669..28956693 (25 bp)	TTTTGTGCATCTGCTAGCCATGGCA	LOC_Os06g47840
Os.8941.1.S1_at--111--173	1	Chr06:28956806..28956830 (25 bp)	ACTTCGGTAAACACATCACCTTCTG	LOC_Os06g47840

Target Sequence

AGGAACTCGTGTCAGAACTCTTGGTTCTCGGGAATTTATTCGCTACTATCGCCAGAAACCACGTCCTTCTGTTGCAACAG
ATCGTGCTCTTGCGCTTTCTCTGGCTTCCAGCTACAAGAGCATGGGTCTGGTNACNAGTTNCAGTCAAAGGAGCAAGTTG
TAAGGCTGAAAGTTCTCCGCGCAATGAACAAGACAGGTGTGGAGACCATGCGAACCAAGATTGGAATGAAGAGCAACGTG
ATCCGCAATCTCCCCAAGAACTGCCCATATTAGTCGATGCCACCTGTTGCAGGATCAAAGCCCTTGGAGCTCCAGCATCA
TCTTTGTGGCAATGGCTGTTTTTTTGTGCATCTGCTAGCCATGGCAGAGAGCTTGTGATATTCGCAAAAACAATAGATCT
TTATATTGTTTAATTTGCACCTCAAATGAGAGTATCATGCTTACTGGAAACAAGACTGTATCCGGTATAAGAGTNATGAC
TTCGGTAAACACATCACCTTCTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis