Browse Element(s) Details


OsAffx.28161.1.S1_at

Description tigr:9634.m04665
TID=OsAffx.28161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4785011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47810NANA6+28934218..28938459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47820Os.50958.1.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47820Os.50958.2.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47830Os.7613.1.S1_at11/116+28945949..28949603OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834Os.23984.1.S1_at11/116+28949826..28952456expressed protein
LOC_Os06g47840Os.8941.1.S1_at11/116+28953622..28956841Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850OsAffx.28161.1.S1_at11/116+28958316..28959150expressed protein
LOC_Os06g47860Os.32500.1.S1_a_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.32500.2.A1_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.56541.1.S1_at1/116+28961590..28964942expressed protein
LOC_Os06g47870NANA6+28965760..28966626hypothetical protein
LOC_Os06g47880OsAffx.5141.1.S1_at11/116+28966976..28968112Protein kinase domain containing protein
LOC_Os06g47890OsAffx.15976.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890Os.4661.1.S1_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47890OsAffx.15976.1.S1_x_at10/116+28968494..28973543ZEITLUPE, putative, expressed
LOC_Os06g47900Os.49737.1.S1_at11/116+28976494..28979782expressed protein
LOC_Os06g47900Os.51829.1.S1_x_at11/116+28976494..28979782expressed protein
LOC_Os06g47910Os.54869.1.S1_at11/116+28980369..28982438GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28161.1.S1_at--724--2111Chr06:28958347..28958371 (25 bp)
ACAGGCCAAGGTTCGAGATCACAAT
LOC_Os06g47850
OsAffx.28161.1.S1_at--408--7991Chr06:28958461..28958485 (25 bp)
GGATGAGGACTTTCAGTGCTGGCTT
LOC_Os06g47850
OsAffx.28161.1.S1_at--311--1131Chr06:28958475..28958499 (25 bp)
AGTGCTGGCTTAACATTGGCCTTTG
LOC_Os06g47850
OsAffx.28161.1.S1_at--168--2691Chr06:28958679..28958703 (25 bp)
AAGCGGTTGGGCTGAGCATCATCTC
LOC_Os06g47850
OsAffx.28161.1.S1_at--443--5931Chr06:28958692..28958716 (25 bp)
GAGCATCATCTCGAGTCTTTTGATA
LOC_Os06g47850
OsAffx.28161.1.S1_at--455--2451Chr06:28958723..28958747 (25 bp)
AAAATCTTGCAGCTTATGTCAGGGC
LOC_Os06g47850
OsAffx.28161.1.S1_at--69--771Chr06:28958738..28958762 (25 bp)
ATGTCAGGGCTCTTCGTTCTTGTTG
LOC_Os06g47850
OsAffx.28161.1.S1_at--803--6571Chr06:28958765..28958789 (25 bp)
GATTCTCTTACGAAGATCGCCTGAA
LOC_Os06g47850
OsAffx.28161.1.S1_at--320--6671Chr06:28958803..28958827 (25 bp)
GTTGCAACGGATCGTGTTCTTCCAC
LOC_Os06g47850
OsAffx.28161.1.S1_at--640--5251Chr06:28959002..28959026 (25 bp)
GAATGCGTTTGGTGACTCTTCAGTC
LOC_Os06g47850
OsAffx.28161.1.S1_at--610--5171Chr06:28959040..28959064 (25 bp)
GCAAGGCTGAAATCTCTCCGAGCAA
LOC_Os06g47850
Target Sequence 
ACAGGCCAAGGTTCGAGATCACAATTTACATTTTGTGTTTTGCTGATATAGAGGATGAGGACTTTCAGTGCTGGCTTAAC
ATTGGCCTTTGGGAATACCAACCAAGGTGGTGTAAGCGGATAAAAGAAGAGGATAATGAGTTAGTTGAGATGGAAAGCGG
TTGGGCTGAGCATCATCTCGAGTCTTTTGATACTAAGCAAAATCTTGCAGCTTATGTCAGGGCTCTTCGTTCTTGTTGGG
GATTCTCTTACGAAGATCGCCTGAAACCACATATTCCTGTTGCAACGGATCGTGTTCTTCCACTTTCCCTGGCTTCCAGC
TACAAGGGAATGCGTTTGGTGACTCTTCAGTCGAAGGAGAAAGCTGCAAGGCTGAAATCTCTCCGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis