Browse Element(s) Details

OsAffx.5141.1.S1_at

Description

tigr:9634.m04669
TID=OsAffx.5141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cyclin dependent kinase 1, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47880	11/11	Protein kinase domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47820	Os.50958.1.S1_at	11/11	6	+	28940273..28942705	Protein kinase domain containing protein, expressed
LOC_Os06g47820	Os.50958.2.S1_at	11/11	6	+	28940273..28942705	Protein kinase domain containing protein, expressed
LOC_Os06g47830	Os.7613.1.S1_at	11/11	6	+	28945949..28949603	OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834	Os.23984.1.S1_at	11/11	6	+	28949826..28952456	expressed protein
LOC_Os06g47840	Os.8941.1.S1_at	11/11	6	+	28953622..28956841	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850	OsAffx.28161.1.S1_at	11/11	6	+	28958316..28959150	expressed protein
LOC_Os06g47860	Os.32500.1.S1_a_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.32500.2.A1_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.56541.1.S1_at	1/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47870	NA	NA	6	+	28965760..28966626	hypothetical protein
LOC_Os06g47880	OsAffx.5141.1.S1_at	11/11	6	+	28966976..28968112	Protein kinase domain containing protein
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000074	biological_process	regulation of progression through cell cycle
GO:0000087	biological_process	M phase of mitotic cell cycle
GO:0007346	biological_process	regulation of progression through mitotic cell cycle
GO:0000307	cellular_component	cyclin-dependent protein kinase holoenzyme complex
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0004693	molecular_function	cyclin-dependent protein kinase activity
GO:0016301	molecular_function	kinase activity
GO:0030332	molecular_function	cyclin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.5141.1.S1_at--119--943	1	Chr06:28967523..28967547 (25 bp)	TCGTGAAGCTGTGCGACCTCGGGCT	LOC_Os06g47880
OsAffx.5141.1.S1_at--671--461	1	Chr06:28967535..28967559 (25 bp)	GCGACCTCGGGCTGGCCATGGACAC	LOC_Os06g47880
OsAffx.5141.1.S1_at--59--267	1	Chr06:28967570..28967594 (25 bp)	AAGCCGCCGTACCAGAAGGCCGGAT	LOC_Os06g47880
OsAffx.5141.1.S1_at--677--341	1	Chr06:28967582..28967606 (25 bp)	CAGAAGGCCGGATCGCCCGGGTACA	LOC_Os06g47880
OsAffx.5141.1.S1_at--481--943	1	Chr06:28967625..28967649 (25 bp)	TCGGGAAGCCGGACTACGGCGAGCT	LOC_Os06g47880
OsAffx.5141.1.S1_at--1125--911	1	Chr06:28967736..28967760 (25 bp)	TGCTGAGAATCTTCCGCCTGCTCGG	LOC_Os06g47880
OsAffx.5141.1.S1_at--859--787	1	Chr06:28967889..28967913 (25 bp)	GGTTCGAGGTCTTGAACGGCCTCCT	LOC_Os06g47880
OsAffx.5141.1.S1_at--443--361	1	Chr06:28967954..28967978 (25 bp)	CTTCGGCTTCCGTGGTTCAACGCCA	LOC_Os06g47880
OsAffx.5141.1.S1_at--996--409	1	Chr06:28967983..28968007 (25 bp)	CGACGGCATAGCAGCAGCTGATGAG	LOC_Os06g47880
OsAffx.5141.1.S1_at--1061--1001	1	Chr06:28967991..28968015 (25 bp)	TAGCAGCAGCTGATGAGACGAAGAT	LOC_Os06g47880
OsAffx.5141.1.S1_at--880--69	1	Chr06:28968003..28968027 (25 bp)	ATGAGACGAAGATCGGTCAGCCGGC	LOC_Os06g47880

Target Sequence

TCGTGAAGCTGTGCGACCTCGGGCTGGCCATGGACACGGCGGCGCGGAAGCCGCCGTACCAGAAGGCCGGATCGCCCGGG
TACAAGGCGCCGGAGATGCTCCTCGGGAAGCCGGACTACGGCGAGCTCGTGGACGCCTGGTCGGCCGGCTGCGTGATGGG
CGAGCTCCTCGCCGGCGTGCCGCTGTTCCGGGGGCACAGCGAGACCGACGAGCTGCTGAGAATCTTCCGCCTGCTCGGCG
CGCCGTGCCGCCAGACATGGCCGAGCTACCCGTCGCTGCCGCTCTTCGGCGCGGAGCGCCTGTCGCGCGACGGGTTCGAG
GTCTTGAACGGCCTCCTCACCTGCAACCCCGACGCGCGGCTGTCGGCGGCGGAGGCGCTTCGGCTTCCGTGGTTCAACGC
CACCGTCGACGGCATAGCAGCAGCTGATGAGACGAAGATCGGTCAGCCGGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis