Browse Element(s) Details


Os.50958.1.S1_at

Description gb:AK105794.1
DB_XREF= gi:32991003
TID=Os.50958.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50958 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H11, full insert sequence.
FL= gb:AK105794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4782011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47780OsAffx.28150.1.S1_x_at1/116+28917721..28919038hypothetical protein
LOC_Os06g47790Os.12652.1.S1_at11/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47790OsAffx.28152.1.S1_s_at1/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47800Os.17058.1.S1_at11/116+28925199..28929068NB-ARC domain containing protein, expressed
LOC_Os06g47810NANA6+28934218..28938459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47820Os.50958.1.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47820Os.50958.2.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47830Os.7613.1.S1_at11/116+28945949..28949603OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834Os.23984.1.S1_at11/116+28949826..28952456expressed protein
LOC_Os06g47840Os.8941.1.S1_at11/116+28953622..28956841Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850OsAffx.28161.1.S1_at11/116+28958316..28959150expressed protein
LOC_Os06g47860Os.32500.1.S1_a_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.32500.2.A1_at11/116+28961590..28964942expressed protein
LOC_Os06g47860Os.56541.1.S1_at1/116+28961590..28964942expressed protein
LOC_Os06g47870NANA6+28965760..28966626hypothetical protein
LOC_Os06g47880OsAffx.5141.1.S1_at11/116+28966976..28968112Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50958.1.S1_at--980--5551Chr06:28941765..28941789 (25 bp)
GAAAGCCGGTGGATGGCAGCCACAA
LOC_Os06g47820
Os.50958.1.S1_at--37--9071Chr06:28942002..28942026 (25 bp)
TGCATCCGCTCGTCGGCGAAGTGGA
LOC_Os06g47820
Os.50958.1.S1_at--545--9411Chr06:28942011..28942035 (25 bp)
TCGTCGGCGAAGTGGAGGCCATCCA
LOC_Os06g47820
Os.50958.1.S1_at--6--8571Chr06:28942023..28942045 (23 bp)
TGGAGGCCATCCATGACCGAGGTGC
LOC_Os06g47820
Os.50958.1.S1_at--776--5291Chr06:28942387..28942411 (25 bp)
GAAGGCGTCGAGATCCGGCAAGAAC
LOC_Os06g47820
Os.50958.1.S1_at--778--831Chr06:28942458..28942482 (25 bp)
ATGGAGATTCGATGACCTGGATGAC
LOC_Os06g47820
Os.50958.1.S1_at--447--1331Chr06:28942500..28942524 (25 bp)
AGAGGAGTTCAACACTGCATCCCCA
LOC_Os06g47820
Os.50958.1.S1_at--112--10411Chr06:28942614..28942638 (25 bp)
TTTTGATAGTTACTCTCCACTGGGC
LOC_Os06g47820
Os.50958.1.S1_at--10--4371Chr06:28942630..28942654 (25 bp)
CCACTGGGCCCACTTGTAAATAGAA
LOC_Os06g47820
Os.50958.1.S1_at--1030--5571Chr06:28942652..28942676 (25 bp)
GAAAGGATTTTCATCTTATCATCAT
LOC_Os06g47820
Os.50958.1.S1_at--272--3551Chr06:28942663..28942687 (25 bp)
CATCTTATCATCATCCAACAGGCTA
LOC_Os06g47820
Target Sequence 
GAAAGCCGGTGGATGGCAGCCACAAGAGCTTGCTCAGCTGGGCGAGGCCGTTCCTGAACGAGGGGAGGATCGAGTCGCTG
GTGGATCCGAGGATCGGCGGCGACTACGACGGCGAGGAGGCGCGGCGGCTGGCGTTCGTGGCGTCGCTGTGCATCCGCTC
GTCGGCGAAGTGGAGGCCATCCATGACCGAGGTGCTGGAGCTGCTGGAAGGCGTCGAGATCCGGCAAGAACGGTGGACGA
TGCCCGAGGCAGTGGAGGACGACGACGACGAGGAGCTATGGAGATTCGATGACCTGGATGACGAAGACGACGAAGATGAA
GAGGAGTTCAACACTGCATCCCCATCTTCTTGCTCATCATCTTTGAGCAATTAGTAGTTAGTAATAGTATCTAAGATTGT
GAGTAAGCTTGTGATGTTGTTACAAGATGAAATTTTTGATAGTTACTCTCCACTGGGCCCACTTGTAAATAGAAAGGATT
TTCATCTTATCATCATCCAACAGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50958.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis