Browse Element(s) Details


Os.12652.1.S1_at

Description gb:AK064280.1
DB_XREF= gi:32974298
TID=Os.12652.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G03, full insert sequence.
FL= gb:AK064280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4779011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47750Os.56824.1.S1_at10/116+28897443..28900945Leucine Rich Repeat family protein, expressed
LOC_Os06g47760Os.54008.1.S1_at11/116+28904579..28908026Leucine Rich Repeat family protein, expressed
LOC_Os06g47770Os.49740.1.S1_at10/116+28909277..28913729expressed protein
LOC_Os06g47780OsAffx.28150.1.S1_x_at1/116+28917721..28919038hypothetical protein
LOC_Os06g47790Os.12652.1.S1_at11/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47790OsAffx.28152.1.S1_s_at1/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47800Os.17058.1.S1_at11/116+28925199..28929068NB-ARC domain containing protein, expressed
LOC_Os06g47810NANA6+28934218..28938459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47820Os.50958.1.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47820Os.50958.2.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47830Os.7613.1.S1_at11/116+28945949..28949603OB-fold nucleic acid binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12652.1.S1_at--122--3631Chr06:28922483..28922507 (25 bp)
CTTGTAGACCCAGCATTGTGTGATG
LOC_Os06g47790
Os.12652.1.S1_at--140--3111Chr06:28922508..28922532 (25 bp)
AATATGAAAGCCCTGTGATAATGCG
LOC_Os06g47790
Os.12652.1.S1_at--1145--8391Chr06:28922580..28922604 (25 bp)
GGCCCACAATGACAGATGTTACTAG
LOC_Os06g47790
Os.12652.1.S1_at--85--2491Chr06:28922805..28922829 (25 bp)
AACACCTGCTGTAGATAGAGATCGT
LOC_Os06g47790
Os.12652.1.S1_at--769--1231Chr06:28922840..28922864 (25 bp)
AGTTGTTTTGTTGAGTCGTCCATAT
LOC_Os06g47790
Os.12652.1.S1_at--132--6111Chr06:28922852..28922876 (25 bp)
GAGTCGTCCATATTGGCGTGCCTTG
LOC_Os06g47790
Os.12652.1.S1_at--84--4011Chr06:28922868..28922892 (25 bp)
CGTGCCTTGGTGATGCAATACTGCA
LOC_Os06g47790
Os.12652.1.S1_at--522--1171Chr06:28922893..28922917 (25 bp)
AGTAATGTAGATTGTGCTCCTGAGA
LOC_Os06g47790
Os.12652.1.S1_at--197--8851Chr06:28922919..28922943 (25 bp)
TGATCAGAGCTATCCACTATGTATG
LOC_Os06g47790
Os.12652.1.S1_at--917--2031Chr06:28922934..28922958 (25 bp)
ACTATGTATGGTGTGTGACGCTGCC
LOC_Os06g47790
Os.12652.1.S1_at--849--7371Chr06:28922948..28922972 (25 bp)
GTGACGCTGCCATTCAACACAAAGC
LOC_Os06g47790
Target Sequence 
CTTGTAGACCCAGCATTGTGTGATGAATATGAAAGCCCTGTGATAATGCGATGCACTCAGGTGGCGCTTCTTTGTGCTCA
AGAAGATCCANCAGANCGGCCCACAATGACAGATGTTACTAGAGTTCTGAACTCTNAAAGCATACTATTATCAGATCCAA
AGNAGCCAACTGAGCTAACTGATGGAGGTGCTAGTANTGACAGGCCATCGACATATATTGGCCAGTCGAGCAAGNCGATA
GACATAACCATCACAAGTTCAGCTCCGGTGTCCACCAGAGTTCGCATCATTGTTGACCCAGAAATTTGATTTGAGGTGGA
AAAACACCTGCTGTAGATAGAGATCGTGGTACAAAAGAGTTGTTTTGTTGAGTCGTCCATATTGGCGTGCCTTGGTGATG
CAATACTGCAAGTAATGTAGATTGTGCTCCTGAGAGTGATCAGAGCTATCCACTATGTATGGTGTGTGACGCTGCCATTC
AACACAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis