Browse Element(s) Details


Os.54008.1.S1_at

Description gb:AK101257.1
DB_XREF= gi:32986466
TID=Os.54008.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032G23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032G23, full insert sequence.
FL= gb:AK101257.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4776011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47730Os.49985.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47730OsAffx.20303.1.S1_at1/116+28880110..28886003retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47740NANA6+28887961..28891152Leucine Rich Repeat family protein
LOC_Os06g47750Os.56824.1.S1_at10/116+28897443..28900945Leucine Rich Repeat family protein, expressed
LOC_Os06g47760Os.54008.1.S1_at11/116+28904579..28908026Leucine Rich Repeat family protein, expressed
LOC_Os06g47770Os.49740.1.S1_at10/116+28909277..28913729expressed protein
LOC_Os06g47780OsAffx.28150.1.S1_x_at1/116+28917721..28919038hypothetical protein
LOC_Os06g47790Os.12652.1.S1_at11/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47790OsAffx.28152.1.S1_s_at1/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47800Os.17058.1.S1_at11/116+28925199..28929068NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54008.1.S1_at--1093--7491Chr06:28905077..28905101 (25 bp)
GTGGTGCTGTACTCAGTAACCTTTG
LOC_Os06g47760
Os.54008.1.S1_at--657--9791Chr06:28905061..28905085 (25 bp)
TAACCTTTGCAGTCCCACTACAAGA
LOC_Os06g47760
Os.54008.1.S1_at--203--2751Chr06:28905035..28905059 (25 bp)
AAGAAAACTTCACCTCACAGCGGCG
LOC_Os06g47760
Os.54008.1.S1_at--378--4711Chr06:28905016..28905040 (25 bp)
GCGGCGCAACTTACGGTGTGCATTA
LOC_Os06g47760
Os.54008.1.S1_at--1118--4931Chr06:28904997..28905021 (25 bp)
GCATTAGTCACTGGAATCACCTTGG
LOC_Os06g47760
Os.54008.1.S1_at--445--8511Chr06:28904986..28905010 (25 bp)
TGGAATCACCTTGGGAGCACTCGTC
LOC_Os06g47760
Os.54008.1.S1_at--829--6291Chr06:28904916..28904940 (25 bp)
GATGATCACACCGAAAGCCTAACTC
LOC_Os06g47760
Os.54008.1.S1_at--1032--2511Chr06:28904896..28904920 (25 bp)
AACTCACCTTCAAATGCGGTACCGA
LOC_Os06g47760
Os.54008.1.S1_at--1066--9811Chr06:28904789..28904813 (25 bp)
TAAACTTCTTTGTATGGCTGCTCAT
LOC_Os06g47760
Os.54008.1.S1_at--61--10411Chr06:28904754..28904778 (25 bp)
TTTTGTCTCTCGGATAGCCTGAAAT
LOC_Os06g47760
Os.54008.1.S1_at--1040--10091Chr06:28904638..28904662 (25 bp)
TAGGCTTTGCATTTGGGCCAACTCT
LOC_Os06g47760
Target Sequence 
GTGGTGCTGTACTCAGTAACCTTTGCAGTCCCACTACAAGAAAAGAAAACTTCACCTCACAGCGGCGCAACTTACGGTGT
GCATTAGTCACTGGAATCACCTTGGGAGCACTCGTCGCTCTTGCTTTGCTTGCATGCTTCTTGATTGGGCGGTTGGTATA
TGATGATCACACCGAAAGCCTAACTCACCTTCAAATGCGGTACCGAAGATAGATGCTTAACAGACTCAGTTTTTTTTTAA
ATTTTTTTTATTTGATTCTGATGCCAGCATTTATGGTTTAATCACTTTTAAACTTCTTTGTATGGCTGCTCATATTGTTT
TTTTTTTGTCTCTCGGATAGCCTGAAATAGCATGCTACTAAATGGTTGTGTGAATTTACTGAATCAACTGTATGAACCAA
GTTGTAACCAATTTCAGGAACCAGATGAGGAGCTTTTGCTAGGCTTTGCATTTGGGCCAACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis