Browse Element(s) Details


Os.17058.1.S1_at

Description gb:AK099477.1
DB_XREF= gi:32984686
TID=Os.17058.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025A03, full insert sequence.
FL= gb:AK099477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4780011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47750Os.56824.1.S1_at10/116+28897443..28900945Leucine Rich Repeat family protein, expressed
LOC_Os06g47760Os.54008.1.S1_at11/116+28904579..28908026Leucine Rich Repeat family protein, expressed
LOC_Os06g47770Os.49740.1.S1_at10/116+28909277..28913729expressed protein
LOC_Os06g47780OsAffx.28150.1.S1_x_at1/116+28917721..28919038hypothetical protein
LOC_Os06g47790Os.12652.1.S1_at11/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47790OsAffx.28152.1.S1_s_at1/116+28921170..28922986Protein kinase domain containing protein, expressed
LOC_Os06g47800Os.17058.1.S1_at11/116+28925199..28929068NB-ARC domain containing protein, expressed
LOC_Os06g47810NANA6+28934218..28938459retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g47820Os.50958.1.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47820Os.50958.2.S1_at11/116+28940273..28942705Protein kinase domain containing protein, expressed
LOC_Os06g47830Os.7613.1.S1_at11/116+28945949..28949603OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834Os.23984.1.S1_at11/116+28949826..28952456expressed protein
LOC_Os06g47840Os.8941.1.S1_at11/116+28953622..28956841Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17058.1.S1_at--567--1451Chr06:28925886..28925910 (25 bp)
AGAAGCTGCCAGATTTCATCCAAAG
LOC_Os06g47800
Os.17058.1.S1_at--670--651Chr06:28925807..28925831 (25 bp)
ATGCACGGCTGAATCCGGCGAGGAT
LOC_Os06g47800
Os.17058.1.S1_at--786--3331Chr06:28925767..28925791 (25 bp)
CACGTTCTGCGGATTTACATCGACA
LOC_Os06g47800
Os.17058.1.S1_at--662--911Chr06:28925451..28925475 (25 bp)
AGGCTGGGCGTCCATACTCTGATAC
LOC_Os06g47800
Os.17058.1.S1_at--773--6471Chr06:28925431..28925455 (25 bp)
GATACTCCTCGTGTATTGAAGGCTT
LOC_Os06g47800
Os.17058.1.S1_at--531--8291Chr06:28925411..28925435 (25 bp)
GGCTTGAAGCGCATCATGTCTGTGT
LOC_Os06g47800
Os.17058.1.S1_at--455--771Chr06:28925396..28925420 (25 bp)
ATGTCTGTGTCATTTGTGCTGCACC
LOC_Os06g47800
Os.17058.1.S1_at--841--9111Chr06:28925380..28925404 (25 bp)
TGCTGCACCCTATTGTGTACGCATA
LOC_Os06g47800
Os.17058.1.S1_at--672--331Chr06:28925358..28925382 (25 bp)
ATACATGTTCGTTCCATGCATGCAT
LOC_Os06g47800
Os.17058.1.S1_at--752--7691Chr06:28925315..28925339 (25 bp)
GGGTACATTTGCTAATTGCTACATA
LOC_Os06g47800
Os.17058.1.S1_at--815--10191Chr06:28925292..28925316 (25 bp)
TATTTGTGCAACTTTCATGTGTAAC
LOC_Os06g47800
Target Sequence 
AGAAGCTGCCAGATTTCATCCAAAGTTTCACTTGTCTTAAGATAATTGGGATTCGTGACTNCCCCGAGTTGAGCAGGAGA
TGCACGGCTGAATCCGGCGAGGATTTTCATCTCATCCACCACGTTCTGCGGATTTACATCGACAATAAAANTCTGGGAAA
AGAATCGTACGTGATGCCCCNCTGACGCCAGGCCTGTAGAGAACCGGCTGGTTTNCAAGACTTTCCGCTCAAAGAAAATT
GCATTCGAATATTTGGTTGGAGTGGCCTTCCAGGCTGGGCGTCCATACTCTGATACTCCTCGTGTATTGAAGGCTTGAAG
CGCATCATGTCTGTGTCATTTGTGCTGCACCCTATTGTGTACGCATACATGTTCGTTCCATGCATGCATACTTTGTGTGT
AATAATTGGGTACATTTGCTAATTGCTACATATTTGTGCAACTTTCATGTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis