Browse Element(s) Details

OsAffx.15976.1.S1_x_at

Description

tigr:9634.m04671
TID=OsAffx.15976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47890	10/11	ZEITLUPE, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47830	Os.7613.1.S1_at	11/11	6	+	28945949..28949603	OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os06g47834	Os.23984.1.S1_at	11/11	6	+	28949826..28952456	expressed protein
LOC_Os06g47840	Os.8941.1.S1_at	11/11	6	+	28953622..28956841	Zinc finger, C2H2 type family protein, expressed
LOC_Os06g47850	OsAffx.28161.1.S1_at	11/11	6	+	28958316..28959150	expressed protein
LOC_Os06g47860	Os.32500.1.S1_a_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.32500.2.A1_at	11/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47860	Os.56541.1.S1_at	1/11	6	+	28961590..28964942	expressed protein
LOC_Os06g47870	NA	NA	6	+	28965760..28966626	hypothetical protein
LOC_Os06g47880	OsAffx.5141.1.S1_at	11/11	6	+	28966976..28968112	Protein kinase domain containing protein
LOC_Os06g47890	OsAffx.15976.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	Os.4661.1.S1_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47890	OsAffx.15976.1.S1_x_at	10/11	6	+	28968494..28973543	ZEITLUPE, putative, expressed
LOC_Os06g47900	Os.49737.1.S1_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47900	Os.51829.1.S1_x_at	11/11	6	+	28976494..28979782	expressed protein
LOC_Os06g47910	Os.54869.1.S1_at	11/11	6	+	28980369..28982438	GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920	OsAffx.28162.1.S1_at	11/11	6	+	28984905..28986851	pentatricopeptide, putative
LOC_Os06g47930	Os.50234.1.S1_at	11/11	6	+	28987079..28989337	expressed protein
LOC_Os06g47940	Os.32506.1.S1_at	11/11	6	+	28992798..28994024	nitrogen fixation protein, putative, expressed
LOC_Os06g47950	OsAffx.15977.1.S1_s_at	11/11	6	+	28994482..28996359	pentatricopeptide, putative, expressed
LOC_Os06g47960	OsAffx.28163.1.S1_at	11/11	6	+	28997830..28998483	RNase H domain-containing protein, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolism
GO:0007623	biological_process	circadian rhythm
GO:0009908	biological_process	flower development
GO:0009911	biological_process	positive regulation of flower development
GO:0042752	biological_process	regulation of circadian rhythm
GO:0043153	biological_process	entrainment of circadian clock by photoperiod
GO:0005634	cellular_component	nucleus
GO:0005829	cellular_component	cytosol
GO:0015030	cellular_component	Cajal body
GO:0004842	molecular_function	ubiquitin-protein ligase activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15976.1.S1_x_at--479--107	1	Chr06:28973203..28973227 (25 bp)	AGGGATGTTCTCGTTCGCGATTGAA	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--292--951	1	Chr06:28973195..28973219 (25 bp)	TCTCGTTCGCGATTGAAGGGATGCT	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--1094--41	1	Chr06:28973112..28973136 (25 bp)	ATCATCTACGTCAACTGCGGGTTCG	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--148--997	1	Chr06:28972805..28973097 (25 bp)	TACCGCGCGGAGGAGTATAGCTTAC	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--322--179	1	NONE	ACCGCGCGGAGGAGTATAGCTTACG	NONE
OsAffx.15976.1.S1_x_at--875--413	1	Chr06:28972800..28973092 (25 bp)	CGCGGAGGAGTATAGCTTACGGATA	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--1029--393	1	Chr06:28972798..28973090 (25 bp)	CGGAGGAGTATAGCTTACGGATAGC	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--982--803	1	Chr06:28972794..28972816 (23 bp)	GGAGTATAGCTTACGGATAGCTGAT	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--973--27	1	Chr06:28972789..28972813 (25 bp)	ATAGCTTACGGATAGCTGATGGCAC	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--1110--489	1	Chr06:28972786..28972810 (25 bp)	GCTTACGGATAGCTGATGGCACTAA	LOC_Os06g47890
OsAffx.15976.1.S1_x_at--148--367	1	Chr06:28972785..28972809 (25 bp)	CTTACGGATAGCTGATGGCACTAAT	LOC_Os06g47890

Target Sequence

AGGGATGTTCTCGTTCGCGATTGAAGGGATGCTGCGCGCTTCGGGGCCGTGCGGGCTCGTCGTCACCGACGCGCTCGAGC
CCGACTGCCCCATCATCTACGTCAACTGCGGGTTCGAGGAGGCCACGGGATACCGCGCGGAGGAGTATAGCTTACGGATA
GCTGATGGCACTAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis