Browse Element(s) Details


Os.11917.1.S1_at

Description gb:AK070249.1
DB_XREF= gi:32980273
TID=Os.11917.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043D01, full insert sequence.
FL= gb:AK070249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4797011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47900Os.49737.1.S1_at11/116+28976494..28979782expressed protein
LOC_Os06g47900Os.51829.1.S1_x_at11/116+28976494..28979782expressed protein
LOC_Os06g47910Os.54869.1.S1_at11/116+28980369..28982438GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g47920OsAffx.28162.1.S1_at11/116+28984905..28986851pentatricopeptide, putative
LOC_Os06g47930Os.50234.1.S1_at11/116+28987079..28989337expressed protein
LOC_Os06g47940Os.32506.1.S1_at11/116+28992798..28994024nitrogen fixation protein, putative, expressed
LOC_Os06g47950OsAffx.15977.1.S1_s_at11/116+28994482..28996359pentatricopeptide, putative, expressed
LOC_Os06g47960OsAffx.28163.1.S1_at11/116+28997830..28998483RNase H domain-containing protein, putative
LOC_Os06g47970Os.11917.1.S1_at11/116+29001191..29002543expressed protein
LOC_Os06g47980OsAffx.5142.1.S1_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47980OsAffx.5142.1.S1_x_at11/116+29010063..29010587hypothetical protein
LOC_Os06g47990Os.35344.18.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990Os.35344.3.S1_x_at9/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g47990OsAffx.22940.5.S1_x_at3/116+29012149..29018046Transposable element protein, putative, MuDR
LOC_Os06g48000OsAffx.15978.1.S1_x_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48000OsAffx.15978.1.S1_at11/116+29020795..29022244Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11917.1.S1_at--1093--8391Chr06:29002118..29002142 (25 bp)
GGCCGTCTGGTCCACGGATAAACAA
LOC_Os06g47970
Os.11917.1.S1_at--241--4851Chr06:29001546..29001570 (25 bp)
GCTACGGTTGGTCGCCGTTCTCGTT
LOC_Os06g47970
Os.11917.1.S1_at--322--7311Chr06:29001466..29001490 (25 bp)
GTGCTGTTCATCGTGCTCGGAACGA
LOC_Os06g47970
Os.11917.1.S1_at--248--9451Chr06:29001450..29001474 (25 bp)
TCGGAACGATCGTTGGCGCTGTCAG
LOC_Os06g47970
Os.11917.1.S1_at--79--4731Chr06:29001433..29001457 (25 bp)
GCTGTCAGGCGGTTTCTCAACAGGA
LOC_Os06g47970
Os.11917.1.S1_at--830--10551Chr06:29001420..29001444 (25 bp)
TTCTCAACAGGAACGACGACGACTA
LOC_Os06g47970
Os.11917.1.S1_at--78--4091Chr06:29001404..29001428 (25 bp)
CGACGACTACGATGATTACTGAATT
LOC_Os06g47970
Os.11917.1.S1_at--1146--3131Chr06:29001379..29001403 (25 bp)
AATTACTGTGTTGCTGATACTGTTA
LOC_Os06g47970
Os.11917.1.S1_at--76--6491Chr06:29001364..29001388 (25 bp)
GATACTGTTAGGAACGATGTCATCA
LOC_Os06g47970
Os.11917.1.S1_at--477--6271Chr06:29001349..29001373 (25 bp)
GATGTCATCAGATCATACCGTGTGT
LOC_Os06g47970
Os.11917.1.S1_at--168--6171Chr06:29001236..29001260 (25 bp)
GAGGAGCAACCTGTATGTATAATTT
LOC_Os06g47970
Target Sequence 
GGCCGTCTGGTCCACGGATAAACAATTCGAGGANCGAACATCTACATCAACCCACCGGTGGCGCCGCCTCTGGTCGGCGG
TTACGGCTATGGCTACGGCTACGGTTGGTCGCCGTTCTCGTTCTTCGCTCCCGGCCCGAGCGTGGCCGTCGGTGTCGGCG
GCGGCTTCGACACGCTGGTGCTGTTCATCGTGCTCGGAACGATCGTTGGCGCTGTCAGGCGGTTTCTCAACAGGAACGAC
GACGACTACGATGATTACTGAATTAATTACTGTGTTGCTGATACTGTTAGGAACGATGTCATCAGATCATACCGTGTGTA
ATGTGATATAGCGAGGCTATTTTTTTTCATGTCAATTCTAAGGGAACAGATCGGTAAGCTAGAAGTGAAATACATTAATT
GGTGCATGAGGAGCAACCTGTATGTATAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11917.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis