Browse Element(s) Details


Os.11548.1.S1_at

Description gb:AK071181.1
DB_XREF= gi:32981204
TID=Os.11548.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.11548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084I20, full insert sequence.
FL= gb:AK071181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5542011/11Peroxidase 35 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55380Os.55956.1.S1_at11/113+31442709..31446679prolyl 4-hydroxylase, putative, expressed
LOC_Os03g55389Os.1175.1.S1_at10/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55389Os.28405.1.S1_x_at5/113+31447755..31453402Casein kinase II, alpha chain 1, putative, expressed
LOC_Os03g55400Os.55702.1.S1_at11/113+31456300..31457825expressed protein
LOC_Os03g55410Os.32471.1.S1_at11/113+31465668..31467190Peroxidase 51 precursor, putative, expressed
LOC_Os03g55420Os.11548.1.S1_at11/113+31469757..31472467Peroxidase 35 precursor, putative, expressed
LOC_Os03g55430Os.10390.1.S1_at11/113+31476797..31477784expressed protein
LOC_Os03g55440OsAffx.25719.1.S1_at11/113+31478415..31480076hypothetical protein
LOC_Os03g55450Os.17749.1.A1_at11/113+31481890..31483415expressed protein
LOC_Os03g55450Os.17749.2.S1_at10/113+31481890..31483415expressed protein
LOC_Os03g55460OsAffx.25720.1.S1_at11/113+31487190..31489692expressed protein
LOC_Os03g55470Os.13860.1.A1_at10/113+31492862..31497250expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11548.1.S1_at--623--7511Chr03:31471887..31471911 (25 bp)
GTGGACCCGAACATCGCGCTGGAGC
LOC_Os03g55420
Os.11548.1.S1_at--727--4631Chr03:31472104..31472128 (25 bp)
GCGTCAAGACCGACCCGTCGCAGGG
LOC_Os03g55420
Os.11548.1.S1_at--973--9651Chr03:31472204..31472228 (25 bp)
TCAGCGGCGGCCACTGCGGTTCTCT
LOC_Os03g55420
Os.11548.1.S1_at--346--1991Chr03:31472216..31472240 (25 bp)
ACTGCGGTTCTCTCAATTGTTCATA
LOC_Os03g55420
Os.11548.1.S1_at--1146--4671Chr03:31472219..31472243 (25 bp)
GCGGTTCTCTCAATTGTTCATAAAT
LOC_Os03g55420
Os.11548.1.S1_at--541--5071Chr03:31472261..31472285 (25 bp)
GCAGCGCTGAAGTTCTGAAAAATAT
LOC_Os03g55420
Os.11548.1.S1_at--57--351Chr03:31472284..31472308 (25 bp)
ATACAACTAGCTTTTTAGAGCAAAA
LOC_Os03g55420
Os.11548.1.S1_at--122--6551Chr03:31472347..31472371 (25 bp)
GATTATTTTGTGCATCTGATAGTGG
LOC_Os03g55420
Os.11548.1.S1_at--412--351Chr03:31472375..31472399 (25 bp)
ATCAATTAAATTACCTAGCTAGGCC
LOC_Os03g55420
Os.11548.1.S1_at--839--4831Chr03:31472392..31472416 (25 bp)
GCTAGGCCAAATGTATTGTGTTTTT
LOC_Os03g55420
Os.11548.1.S1_at--156--7411Chr03:31472409..31472433 (25 bp)
GTGTTTTTTAACTATGGGAGCAAGA
LOC_Os03g55420
Target Sequence 
GTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACNCCGCGCGCNTTCGACAACCANNNNTTCGTCAANCCTCCAGA
AGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCNCNTCGCGCCCCACCGTCGACGCNTGGGCGGC
CAANANGCTCCGACTTCGAGCTNNCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGT
CGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGANNCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGC
GGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAA
ATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCAT
CTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis