Browse Element(s) Details


Os.11570.1.S1_at

Description gb:AK101484.1
DB_XREF= gi:32986693
TID=Os.11570.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11570 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041G24, full insert sequence.
FL= gb:AK101484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4159011/11Glycerol-3-phosphate dehydrogenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41560Os.14919.1.S1_at5/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.30013.5.S1_x_at3/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56216.1.S1_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_x_at2/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560Os.56292.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41560OsAffx.29313.1.S1_at1/115+24249285..24258176transposon protein, putative, Mutator sub-class
LOC_Os05g41570NANA5+24259340..24259720hypothetical protein
LOC_Os05g41580Os.27028.1.A1_at2/115+24263999..24270810Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os05g41590Os.11570.1.S1_s_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.11570.1.S1_at11/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41590Os.35559.1.S1_at6/115+24274702..24277906Glycerol-3-phosphate dehydrogenase, putative, expressed
LOC_Os05g41599NANA5+24279361..24279781NA
LOC_Os05g41610Os.4160.1.S1_at11/115+24288010..24291479Glucan endo-1,3-beta-glucosidase GVI precursor, putative, expressed
LOC_Os05g41620Os.14205.1.S1_at11/115+24291803..24293628expressed protein
LOC_Os05g41630OsAffx.15060.1.S1_at11/115+24293707..24294697expressed protein
LOC_Os05g41640Os.9261.1.A1_at11/115+24295444..24298321Phosphoglycerate kinase, chloroplast precursor, putative, expressed
LOC_Os05g41650NANA5+24299227..24299556hypothetical protein
LOC_Os05g41660OsAffx.4591.1.S1_at11/115+24299974..24301290ICE-like protease p20 domain containing protein, expressed
LOC_Os05g41670Os.5532.1.S1_at11/115+24301696..24304131latex-abundant protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006072biological_processglycerol-3-phosphate metabolism
GO:0009331cellular_componentglycerol-3-phosphate dehydrogenase complex
GO:0004367molecular_functionglycerol-3-phosphate dehydrogenase (NAD+) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11570.1.S1_at--33--2891Chr05:24277252..24277378 (25 bp)
AAGGGACTATCCAGGGTGTCTCTGC
LOC_Os05g41590
Os.11570.1.S1_at--873--1071Chr05:24277253..24277379 (25 bp)
AGGGACTATCCAGGGTGTCTCTGCA
LOC_Os05g41590
Os.11570.1.S1_at--428--5631Chr05:24277424..24277448 (25 bp)
GACACATCCAGAAGTGAAGAAGCTT
LOC_Os05g41590
Os.11570.1.S1_at--44--2191Chr05:24277425..24277449 (25 bp)
ACACATCCAGAAGTGAAGAAGCTTG
LOC_Os05g41590
Os.11570.1.S1_at--417--3531Chr05:24277428..24277452 (25 bp)
CATCCAGAAGTGAAGAAGCTTGTTG
LOC_Os05g41590
Os.11570.1.S1_at--1037--571Chr05:24277429..24277453 (25 bp)
ATCCAGAAGTGAAGAAGCTTGTTGC
LOC_Os05g41590
Os.11570.1.S1_at--629--3411Chr05:24277432..24277456 (25 bp)
CAGAAGTGAAGAAGCTTGTTGCTCC
LOC_Os05g41590
Os.11570.1.S1_at--63--1471Chr05:24277433..24277457 (25 bp)
AGAAGTGAAGAAGCTTGTTGCTCCG
LOC_Os05g41590
Os.11570.1.S1_at--188--571Chr05:24277494..24277602 (25 bp)
ATCCTAATCAAGAGGGAGCTTGCCA
LOC_Os05g41590
Os.11570.1.S1_at--193--9251Chr05:24277495..24277603 (25 bp)
TCCTAATCAAGAGGGAGCTTGCCAC
LOC_Os05g41590
Os.11570.1.S1_at--494--4291Chr05:24277496..24277604 (25 bp)
CCTAATCAAGAGGGAGCTTGCCACT
LOC_Os05g41590
Target Sequence 
AAGGGACTATCCAGGGTGTCTCTGCAGTCCATGCATTTTATGAGCTCTTGAGCCAGAGTAGCTTAAGCGTGACACATCCA
GAAGTGAAGAAGCTTGTTGCTCCGGTCGAGCTGTGCCCAATACTAAAAACACTTTATAAAATCCTAATCAAGAGGGAGCT
TGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11570.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis