Browse Element(s) Details


Os.11578.1.S1_at

Description gb:AK068227.1
DB_XREF= gi:32978245
TID=Os.11578.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11578 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013136N03, full insert sequence.
FL= gb:AK068227.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4016011/11thylakoid lumen protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40110Os.6122.1.S1_at11/118+25255520..25259472N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os08g40120OsAffx.17428.1.S1_x_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40120OsAffx.17428.1.S1_at10/118+25262496..25264789hypothetical protein
LOC_Os08g40130OsAffx.17429.1.S1_at11/118+25266422..25267567heavy metal-associated domain containing protein
LOC_Os08g40140Os.24791.1.S1_at11/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40140OsAffx.19114.1.S1_x_at1/118+25268416..25271796Geranylgeranyl transferase type II beta subunit, putative, expressed
LOC_Os08g40150Os.19417.1.S1_a_at11/118+25272128..25276260AT-hook protein 1, putative, expressed
LOC_Os08g40160Os.11578.1.S1_at11/118+25283288..25285949thylakoid lumen protein, chloroplast precursor, putative, expressed
LOC_Os08g40170Os.5060.1.S1_at11/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40170OsAffx.27261.1.S1_at2/118+25287041..25288924Cell division control protein 2 homolog D, putative, expressed
LOC_Os08g40180Os.7600.1.S1_at11/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40180Os.48518.1.S1_at1/118+25293848..252986563-hydroxy-3-methylglutaryl-coenzyme A reductase 3, putative, expressed
LOC_Os08g40190NANA8+25301590..25303396expressed protein
LOC_Os08g40200OsAffx.6092.1.S1_at11/118+25304354..25308010serine/threonine protein phosphatase, putative, expressed
LOC_Os08g40210NANA8+25308379..25308708expressed protein
LOC_Os08g40220NANA8+25310492..25310781hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11578.1.S1_at--1116--8231Chr08:25285023..25285047 (25 bp)
GGCACATTGTCTCGGCCATCGGGAT
LOC_Os08g40160
Os.11578.1.S1_at--392--6231Chr08:25285045..25285069 (25 bp)
GATGGCGTTCAACGGCTGGTACAAC
LOC_Os08g40160
Os.11578.1.S1_at--242--8571Chr08:25285061..25285085 (25 bp)
TGGTACAACCGGCTCTACACGGTGA
LOC_Os08g40160
Os.11578.1.S1_at--89--10551Chr08:25285654..25285678 (25 bp)
TTCATGTCATCAGTTCAACCAACTA
LOC_Os08g40160
Os.11578.1.S1_at--460--7031Chr08:25285682..25285706 (25 bp)
GTACACCAATTGTTCCGAGATTTTG
LOC_Os08g40160
Os.11578.1.S1_at--487--6051Chr08:25285698..25285722 (25 bp)
GAGATTTTGACGATGCGGCCTTGCC
LOC_Os08g40160
Os.11578.1.S1_at--1114--10691Chr08:25285718..25285742 (25 bp)
TTGCCGAGGCCAACATGAGCTAATT
LOC_Os08g40160
Os.11578.1.S1_at--86--7531Chr08:25285748..25285772 (25 bp)
GTGGCAAGTCATAAGCATTGTTTTC
LOC_Os08g40160
Os.11578.1.S1_at--298--6871Chr08:25285802..25285826 (25 bp)
GTATTTGTTAGATTTCAGGCGGCCA
LOC_Os08g40160
Os.11578.1.S1_at--871--3071Chr08:25285844..25285868 (25 bp)
AATCACCCAAAGTTGCACATTGCTA
LOC_Os08g40160
Os.11578.1.S1_at--629--10411Chr08:25285873..25285897 (25 bp)
TTAGTTCATTTTAACATCCCAGTTT
LOC_Os08g40160
Target Sequence 
GGCACATTGTCTCGGCCATCGGGATGGCGTTCAACGGCTGGTACAACCGGCTCTACACGGTGACAGGCCANTACATCGAT
GAGGACGGGGATGTANACAAGTACAGGGCTCANATANAGAAGTGTGTTCAGTCATTCANGTTCACATGAAAGAGGAGCAT
CCTACACAACATCCAACAAGGCGAGGACGAAAAACATTTTGTAAACCAACGTATTTCGTTATAATTGTAAATCAATCAGT
ATATTCATGTCATCAGTTCAACCAACTAAATGTACACCAATTGTTCCGAGATTTTGACGATGCGGCCTTGCCGAGGCCAA
CATGAGCTAATTATGTTGTGGCAAGTCATAAGCATTGTTTTCTATGCATTTTTAAGGGAGAAAAAACAGGTGTATTTGTT
AGATTTCAGGCGGCCAAAATTTTGTAAAATTTCAATCACCCAAAGTTGCACATTGCTATATTTTAGTTCATTTTAACATC
CCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11578.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis